Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NP165_RS02075 Genome accession   NZ_CP102096
Coordinates   422232..422750 (+) Length   172 a.a.
NCBI ID   WP_257084691.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 417232..427750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS02065 (NP165_02065) gshA 420029..421597 (+) 1569 WP_257084689.1 glutamate--cysteine ligase -
  NP165_RS02070 (NP165_02070) - 421608..422207 (+) 600 WP_257084690.1 hypothetical protein -
  NP165_RS02075 (NP165_02075) luxS 422232..422750 (+) 519 WP_257084691.1 S-ribosylhomocysteine lyase Regulator
  NP165_RS02080 (NP165_02080) - 422798..423274 (-) 477 WP_257084692.1 RDD family protein -
  NP165_RS02085 (NP165_02085) - 423442..424710 (-) 1269 WP_257084693.1 DUF2254 domain-containing protein -
  NP165_RS02095 (NP165_02095) - 425118..425369 (-) 252 WP_257084694.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NP165_RS02100 (NP165_02100) - 425581..426219 (+) 639 WP_257084695.1 helix-turn-helix transcriptional regulator -
  NP165_RS02105 (NP165_02105) - 426402..427397 (+) 996 WP_257084696.1 transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19072.77 Da        Isoelectric Point: 4.6307

>NTDB_id=714341 NP165_RS02075 WP_257084691.1 422232..422750(+) (luxS) [Vibrio japonicus strain JCM 31412]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEAQVAESWLAAMHDVLKVESQDQIPELNEYQCGTAAMHSLDEAKQIAQNIIDAGISVNKNDELA
LPEEMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=714341 NP165_RS02075 WP_257084691.1 422232..422750(+) (luxS) [Vibrio japonicus strain JCM 31412]
ATGCCGTTATTAGATAGCTTTACCGTTGATCACACTCGCATGAATGCACCTGCGGTACGTGTGGCAAAAACGATGACTAC
ACCAAAAGGTGATACGATCACCGTCTTTGATTTGCGCTTTACGGCTCCAAATAAAGATATACTTTCAGAAAAAGGTATCC
ACACGTTGGAACACCTATATGCTGGCTTTATGCGTAAACACTTAAACGGAGACAGTGTTGAGATTATCGATATCTCACCT
ATGGGCTGCCGTACAGGTTTTTACATGAGCTTAATTGGTACACCTTCGGAAGCGCAGGTCGCGGAATCGTGGCTTGCTGC
AATGCACGACGTGTTAAAGGTTGAAAGTCAGGATCAGATTCCAGAATTGAATGAATATCAATGCGGAACAGCCGCAATGC
ATTCCTTAGATGAAGCCAAGCAAATTGCTCAGAATATTATTGATGCTGGCATTAGCGTCAATAAGAACGATGAGTTGGCA
CTACCTGAAGAAATGTTGAAAGAGTTGCGTGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866