Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NP165_RS00930 Genome accession   NZ_CP102096
Coordinates   191153..192160 (+) Length   335 a.a.
NCBI ID   WP_257084502.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 186153..197160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS00915 (NP165_00915) - 186558..187835 (-) 1278 WP_257084500.1 malic enzyme-like NAD(P)-binding protein -
  NP165_RS00920 (NP165_00920) rpmE 188080..188298 (-) 219 WP_053410189.1 50S ribosomal protein L31 -
  NP165_RS00925 (NP165_00925) priA 188603..190804 (+) 2202 WP_257084501.1 primosomal protein N' -
  NP165_RS00930 (NP165_00930) cytR 191153..192160 (+) 1008 WP_257084502.1 DNA-binding transcriptional regulator CytR Regulator
  NP165_RS00935 (NP165_00935) - 192270..192818 (+) 549 WP_257084503.1 SPOR domain-containing protein -
  NP165_RS00940 (NP165_00940) hslV 192957..193502 (+) 546 WP_257084504.1 ATP-dependent protease subunit HslV -
  NP165_RS00945 (NP165_00945) hslU 193544..194875 (+) 1332 WP_257084505.1 HslU--HslV peptidase ATPase subunit -
  NP165_RS00950 (NP165_00950) - 195101..196504 (+) 1404 WP_257084506.1 SPFH domain-containing protein -
  NP165_RS00955 (NP165_00955) frdD 196628..197005 (-) 378 WP_257084507.1 fumarate reductase subunit FrdD -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36928.57 Da        Isoelectric Point: 6.6041

>NTDB_id=714331 NP165_RS00930 WP_257084502.1 191153..192160(+) (cytR) [Vibrio japonicus strain JCM 31412]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSGQHNKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQISGPEPAVLCQFRRQGYQQALRRAGVTMNPNYSVFGDFTFEAGAAAIRQLLALPEPPTA
VFCHNDAMAIGAIQQAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPRMI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=714331 NP165_RS00930 WP_257084502.1 191153..192160(+) (cytR) [Vibrio japonicus strain JCM 31412]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCGGGAGTTTCGACAGCGACGGTATCTAGAGCGTTGATGAATCCGGAAAA
AGTGTCTTCAACCACAAGAAAGAGAGTTGAAGATGCAGTGTTAGAAGCTGGATATTCACCAAACTCTTTGGCGCGAAATC
TGCGTCGCAACGAATCGAAGACTATCATTGCCATTATTCCAGATATCTGTGATCCGTATTACACCGAGATCATTCGCGGC
ATCGAAGACGCGGCAATGGAGCATGGTTATATTGTTTTGCTTGGTGACAGTGGCCAGCACAACAAACGTGAAAGTTCATT
TGTAAACTTGGTCTTCACCAAACAAGCTGACGGCATGCTTTTGTTAGGTACGGATTTACCATTTGATGTGAGTAAACCTG
AACAAAAAAACCTACCACCTATGGTCATGGCTTGTGAGTTTGCACCGGAATTGGAACTTCCAACTGTTCATATCGACAAT
CTGACTTCTGCTTTTGAGGCGGTAAATTACTTGACTCAAATGGGGCATAAACGTGTTGCTCAAATATCTGGACCTGAGCC
AGCGGTATTATGTCAGTTTCGTCGCCAAGGGTATCAGCAAGCGTTGCGTCGTGCAGGCGTAACAATGAACCCGAACTACA
GCGTTTTCGGTGACTTTACCTTTGAAGCTGGTGCGGCGGCCATTCGACAACTATTGGCCCTACCTGAGCCGCCTACTGCT
GTTTTTTGTCACAATGACGCGATGGCAATAGGAGCGATTCAACAAGCCAAAAAACTAGGCTTACGAGTCCCTCAGGATTT
ATCGGTCGTAGGTTTTGATGATATACATTTTGCGCAGTACTGTGATCCACCGCTTACCACTATTTCCCAGCCCCGTTATG
AGATTGGTCGCCAAGCGATGCTTATGATGTTGGAGCTTCTGCGTGGGCATGATGTCCGAGCGGGTTCTCGATTGCTGGAA
ACAAAGCTGGTTGTGCGCGAAAGTGCAGCGCCCCCTCGCATGATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.265

99.104

0.904
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.403

0.875