Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ84_RS08835 Genome accession   NZ_CP102094
Coordinates   1802833..1804623 (-) Length   596 a.a.
NCBI ID   WP_109371884.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797833..1809623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08810 (NQZ84_08810) - 1798153..1798518 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  NQZ84_RS08815 (NQZ84_08815) - 1798640..1799542 (-) 903 WP_002942329.1 ABC transporter permease -
  NQZ84_RS08820 (NQZ84_08820) opp4B 1799556..1800512 (-) 957 WP_257047538.1 oligopeptide ABC transporter permease -
  NQZ84_RS08825 (NQZ84_08825) - 1800514..1801455 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  NQZ84_RS08830 (NQZ84_08830) - 1801458..1802456 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  NQZ84_RS08835 (NQZ84_08835) oppA 1802833..1804623 (-) 1791 WP_109371884.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ84_RS08840 (NQZ84_08840) pbp3 1804836..1806077 (+) 1242 WP_024389685.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ84_RS08845 (NQZ84_08845) sufB 1806344..1807759 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  NQZ84_RS08850 (NQZ84_08850) sufU 1807940..1808380 (-) 441 WP_044678335.1 Fe-S cluster assembly sulfur transfer protein SufU -
  NQZ84_RS08855 (NQZ84_08855) - 1808367..1809590 (-) 1224 WP_015647356.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65646.35 Da        Isoelectric Point: 4.4109

>NTDB_id=714319 NQZ84_RS08835 WP_109371884.1 1802833..1804623(-) (oppA) [Streptococcus suis strain 12RC1]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSATTSSGLLIDELTENNIDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLDAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=714319 NQZ84_RS08835 WP_109371884.1 1802833..1804623(-) (oppA) [Streptococcus suis strain 12RC1]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGACGCACAAT
TGAAATACGCTTTTGTTTCAGCTACAACTTCATCAGGACTTTTGATCGATGAATTGACTGAAAACAATATTGATTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACATATCT
ATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCACCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTCGGTTCTTTGGATTCAGCTTATGAATATATT
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTCAAGATTAC
TTTTGCTGCTCGTAAACGTACTGAAGCCAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGATTGA
ACGTTGAACTTTACACAGGTCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAACGATCCTGCTATCGAT
ATGTATGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACTGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGGACGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

91.779

100

0.918