Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NQZ84_RS08775 Genome accession   NZ_CP102094
Coordinates   1792612..1793346 (-) Length   244 a.a.
NCBI ID   WP_024408312.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787612..1798346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08745 (NQZ84_08745) rnpM 1787839..1788135 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  NQZ84_RS08750 (NQZ84_08750) nusA 1788152..1789294 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  NQZ84_RS08755 (NQZ84_08755) rimP 1789368..1789838 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ84_RS08760 (NQZ84_08760) trmB 1790096..1790734 (-) 639 WP_044668812.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ84_RS08765 (NQZ84_08765) ccrZ 1790731..1791525 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  NQZ84_RS08770 (NQZ84_08770) - 1791575..1792615 (-) 1041 WP_257047550.1 ABC transporter permease -
  NQZ84_RS08775 (NQZ84_08775) pptA 1792612..1793346 (-) 735 WP_024408312.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS08780 (NQZ84_08780) - 1793409..1793822 (+) 414 WP_024386232.1 HIT family protein -
  NQZ84_RS08785 (NQZ84_08785) - 1793824..1794126 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  NQZ84_RS08790 (NQZ84_08790) - 1794235..1795428 (-) 1194 WP_044668818.1 LCP family protein -
  NQZ84_RS08795 (NQZ84_08795) - 1795425..1795952 (-) 528 WP_044692724.1 GNAT family N-acetyltransferase -
  NQZ84_RS08800 (NQZ84_08800) tsaE 1795945..1796385 (-) 441 WP_079397976.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NQZ84_RS08805 (NQZ84_08805) - 1796486..1798150 (-) 1665 WP_257047541.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26845.10 Da        Isoelectric Point: 4.3606

>NTDB_id=714318 NQZ84_RS08775 WP_024408312.1 1792612..1793346(-) (pptA) [Streptococcus suis strain 12RC1]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELNLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=714318 NQZ84_RS08775 WP_024408312.1 1792612..1793346(-) (pptA) [Streptococcus suis strain 12RC1]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAAACCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717