Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ84_RS08065 Genome accession   NZ_CP102094
Coordinates   1649299..1651074 (-) Length   591 a.a.
NCBI ID   WP_257047864.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644299..1656074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08040 (NQZ84_08040) - 1644381..1644803 (+) 423 WP_013730506.1 membrane protein -
  NQZ84_RS08045 (NQZ84_08045) - 1644793..1646592 (+) 1800 WP_172107570.1 acyltransferase family protein -
  NQZ84_RS08050 (NQZ84_08050) - 1646818..1647471 (-) 654 WP_257047860.1 phosphatase PAP2 family protein -
  NQZ84_RS08055 (NQZ84_08055) - 1647496..1648053 (-) 558 WP_257047862.1 ECF transporter S component -
  NQZ84_RS08060 (NQZ84_08060) - 1648377..1648922 (-) 546 WP_002939238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NQZ84_RS08065 (NQZ84_08065) oppA 1649299..1651074 (-) 1776 WP_257047864.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ84_RS08070 (NQZ84_08070) yidD 1651494..1651733 (-) 240 WP_024378621.1 membrane protein insertion efficiency factor YidD -
  NQZ84_RS08075 (NQZ84_08075) - 1651733..1652464 (-) 732 WP_044764267.1 pseudouridine synthase -
  NQZ84_RS08080 (NQZ84_08080) scpB 1652454..1653023 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  NQZ84_RS08085 (NQZ84_08085) - 1653007..1653726 (-) 720 WP_002942755.1 segregation/condensation protein A -
  NQZ84_RS08090 (NQZ84_08090) xerD 1653726..1654457 (-) 732 WP_044675068.1 site-specific tyrosine recombinase XerD -
  NQZ84_RS08095 (NQZ84_08095) cbpB 1654454..1654912 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  NQZ84_RS08100 (NQZ84_08100) - 1654909..1655436 (-) 528 WP_167786799.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65512.21 Da        Isoelectric Point: 4.2816

>NTDB_id=714315 NQZ84_RS08065 WP_257047864.1 1649299..1651074(-) (oppA) [Streptococcus suis strain 12RC1]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHQGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAQAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLESYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSEIAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=714315 NQZ84_RS08065 WP_257047864.1 1649299..1651074(-) (oppA) [Streptococcus suis strain 12RC1]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACATCAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGCTAGACGATTCAGGCCTTGCTCAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAAGTTGATGACTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCCCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGAGAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGATC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAAATAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAATCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACACAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCAGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.32

100

0.657