Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NQZ84_RS01125 Genome accession   NZ_CP102094
Coordinates   218001..218714 (+) Length   237 a.a.
NCBI ID   WP_002935950.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 213001..223714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS01115 (NQZ84_01115) treC 214067..215692 (-) 1626 WP_044681403.1 alpha,alpha-phosphotrehalase -
  NQZ84_RS01120 (NQZ84_01120) treP 215773..217767 (-) 1995 WP_257048744.1 PTS system trehalose-specific EIIBC component -
  NQZ84_RS01125 (NQZ84_01125) treR 218001..218714 (+) 714 WP_002935950.1 trehalose operon repressor Regulator
  NQZ84_RS01130 (NQZ84_01130) - 218772..219083 (+) 312 WP_002935948.1 hypothetical protein -
  NQZ84_RS01135 (NQZ84_01135) - 219080..219628 (+) 549 WP_002935945.1 CvpA family protein -
  NQZ84_RS01140 (NQZ84_01140) - 219790..222123 (+) 2334 WP_257048740.1 endonuclease MutS2 -
  NQZ84_RS01145 (NQZ84_01145) - 222289..222669 (+) 381 WP_044754644.1 DUF1310 family protein -
  NQZ84_RS01150 (NQZ84_01150) - 222676..223026 (+) 351 WP_228477537.1 hypothetical protein -
  NQZ84_RS01155 (NQZ84_01155) - 223074..223451 (+) 378 WP_044754646.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27258.10 Da        Isoelectric Point: 6.2808

>NTDB_id=714289 NQZ84_RS01125 WP_002935950.1 218001..218714(+) (treR) [Streptococcus suis strain 12RC1]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLDLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=714289 NQZ84_RS01125 WP_002935950.1 218001..218714(+) (treR) [Streptococcus suis strain 12RC1]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGACCTTGATATTGCTTACGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515