Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NF398_RS07860 Genome accession   NZ_CP102087
Coordinates   1603727..1604443 (+) Length   238 a.a.
NCBI ID   WP_002436958.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain K1-2-2-23     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598727..1609443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF398_RS07835 - 1599414..1600040 (+) 627 WP_002436950.1 nitroreductase family protein -
  NF398_RS07840 - 1600142..1600927 (+) 786 WP_002436943.1 carbon-nitrogen family hydrolase -
  NF398_RS12470 - 1601295..1601372 (-) 78 WP_049307263.1 delta-lysin family phenol-soluble modulin -
  NF398_RS07845 - 1601689..1602255 (+) 567 WP_002436953.1 accessory gene regulator AgrB -
  NF398_RS07850 agrD 1602258..1602398 (+) 141 WP_030063609.1 cyclic lactone autoinducer peptide AgrD -
  NF398_RS07855 agrC 1602422..1603711 (+) 1290 WP_002436956.1 quorum-sensing sensor histidine kinase AgrC -
  NF398_RS07860 agrA 1603727..1604443 (+) 717 WP_002436958.1 quorum-sensing response regulator AgrA Regulator
  NF398_RS07865 - 1604508..1605467 (-) 960 WP_023350003.1 carbohydrate kinase -
  NF398_RS07870 - 1605474..1606949 (-) 1476 WP_002469613.1 sucrose-6-phosphate hydrolase -
  NF398_RS07875 - 1607184..1608134 (-) 951 WP_023350002.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27857.83 Da        Isoelectric Point: 5.2308

>NTDB_id=714231 NF398_RS07860 WP_002436958.1 1603727..1604443(+) (agrA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
MKIFVCEDDPRQRENMVSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=714231 NF398_RS07860 WP_002436958.1 1603727..1604443(+) (agrA) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
ATGAAGATATTCGTTTGCGAAGACGATCCTAGACAAAGAGAAAACATGGTTTCAATTATCAAAAATTACATCATGATAGA
AGAAAAACCTATGGAACTAGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATTG
GTTGTTATTTCTTAGACATTCAATTAGAAGCTGATATGAATGGTATTAAACTTGGTAGTGAAATTCGTAAACATGACCCT
GTGGGTAACATTATTTTTGTAACAAGTCACAGCGAACTTACTTATCTCACTTTTGTTTATAAAGTGGCTGCTATGGATTT
CATTTTCAAAGATGATCCTTCAGAACTAAAAACAAGAATCATTGACTGTCTTGAAACTGCTCATACACGTCTTAAGTTGC
TATCTAAAGAAAGTAATGTTGAAACAATTGAGTTAAAACGTGGTAGTAACTCTGTGTATGTTCAATATGACGATATTATG
TTCTTTGAATCATCAACTAAGTCACACAGATTAATCGCACACTTAGATAACCGTCAAATTGAATTTTACGGTAATCTTAA
AGAGTTAGCTCAACTTGATGAACGTTTCTTTAGATGTCATAACAGCTTTGTAGTGAATAGACATAACATTGAATCGATTG
ATTCTAAAGAGCGTATCGTTTATTTCAAAAATGGTGAAAATTGTTTCGCGTCTGTGCGTAATGTTAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

91.176

100

0.912