Detailed information NTG0714203

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NL417_RS05620
• Genome accession: NZ_CP116916
• Coordinates: 1001363..1002355 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MLI023K2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 996363..1007355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL417_RS05590 (NL417_005590)	ispD	996424..997134 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NL417_RS05595 (NL417_005595)	ispF	997134..997613 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NL417_RS05600 (NL417_005600)	truD	997610..998659 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
NL417_RS05605 (NL417_005605)	surE	998640..999401 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
NL417_RS05610 (NL417_005610)	pcm	999395..1000021 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
NL417_RS05615 (NL417_005615)	nlpD	1000206..1001300 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
NL417_RS05620 (NL417_005620)	rpoS	1001363..1002355 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
NL417_RS05625 (NL417_005625)	ygbN	1002449..1003813 (-)	1365	WP_000104441.1	GntP family transporter	-
NL417_RS05630 (NL417_005630)	ygbM	1003902..1004678 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
NL417_RS05635 (NL417_005635)	ygbL	1004683..1005321 (-)	639	WP_001278994.1	aldolase	-
NL417_RS05640 (NL417_005640)	otnK	1005318..1006580 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=714203 NL417_RS05620 WP_000081550.1 1001363..1002355(+) (rpoS) [Escherichia coli strain MLI023K2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=714203 NL417_RS05620 WP_000081550.1 1001363..1002355(+) (rpoS) [Escherichia coli strain MLI023K2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715