Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | DAECLI1_RS15150 | Genome accession | NZ_AP018784 |
| Coordinates | 3061251..3061880 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839151.1 | Uniprot ID | A0A066SWI0 |
| Organism | Escherichia coli strain SK1144 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3033602..3065540 | 3061251..3061880 | within | 0 |
| IScluster/Tn | 3058072..3072889 | 3061251..3061880 | within | 0 |
Gene organization within MGE regions
Location: 3033602..3072889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAECLI1_RS14995 (DAECLI1_28730) | torR | 3034109..3034801 (+) | 693 | WP_001120112.1 | two-component system response regulator TorR | - |
| DAECLI1_RS15000 (DAECLI1_28740) | torT | 3034774..3035802 (-) | 1029 | WP_001264949.1 | TMAO reductase system periplasmic protein TorT | - |
| DAECLI1_RS15005 (DAECLI1_28750) | torS | 3035885..3038628 (+) | 2744 | Protein_2946 | TMAO reductase system sensor histidine kinase/response regulator TorS | - |
| DAECLI1_RS15010 (DAECLI1_28760) | yccM | 3038700..3039773 (+) | 1074 | WP_000818460.1 | 4Fe-4S binding protein | - |
| DAECLI1_RS15015 (DAECLI1_28770) | gnsA | 3039822..3039995 (-) | 174 | WP_001019197.1 | GnsA/GnsB family addiction module toxin | - |
| DAECLI1_RS15020 | ymcE | 3039985..3040215 (-) | 231 | WP_001309400.1 | protein YmcE | - |
| DAECLI1_RS15025 | ymcF | 3040190..3040378 (-) | 189 | WP_071524879.1 | cold-shock protein | - |
| DAECLI1_RS15030 (DAECLI1_28780) | cspG | 3040389..3040601 (-) | 213 | WP_000066490.1 | cold shock protein CspG | - |
| DAECLI1_RS15035 (DAECLI1_28790) | cspH | 3040887..3041099 (+) | 213 | WP_000087763.1 | cold shock-like protein CspH | - |
| DAECLI1_RS15040 (DAECLI1_28800) | appA | 3041087..3042397 (-) | 1311 | WP_001295941.1 | bifunctional acid phosphatase/4-phytase | - |
| DAECLI1_RS15045 | cbdX | 3042477..3042569 (-) | 93 | WP_000270305.1 | cytochrome bd-II oxidase subunit CbdX | - |
| DAECLI1_RS15050 (DAECLI1_28810) | appB | 3042582..3043718 (-) | 1137 | WP_000460803.1 | cytochrome d ubiquinol oxidase subunit II | - |
| DAECLI1_RS15055 (DAECLI1_28820) | appC | 3043730..3045274 (-) | 1545 | WP_000263563.1 | cytochrome bd-II oxidase subunit 1 | - |
| DAECLI1_RS15060 (DAECLI1_28830) | hyaF | 3045408..3046265 (-) | 858 | WP_000004879.1 | hydrogenase expression/formation protein | - |
| DAECLI1_RS15065 (DAECLI1_28840) | hyaE | 3046262..3046660 (-) | 399 | WP_000063960.1 | hydrogenase-1 operon protein HyaE | - |
| DAECLI1_RS15070 (DAECLI1_28850) | hyaD | 3046657..3047244 (-) | 588 | WP_000003638.1 | hydrogenase 1 maturation protease | - |
| DAECLI1_RS15075 (DAECLI1_28860) | hyaC | 3047241..3047948 (-) | 708 | WP_001186413.1 | Ni/Fe-hydrogenase b-type cytochrome subunit | - |
| DAECLI1_RS15080 (DAECLI1_28870) | hyaB | 3047967..3049760 (-) | 1794 | WP_000107362.1 | Ni/Fe-hydrogenase large subunit | - |
| DAECLI1_RS15085 (DAECLI1_28880) | hyaA | 3049757..3050875 (-) | 1119 | WP_001295940.1 | hydrogenase 1 small subunit | - |
| DAECLI1_RS15095 (DAECLI1_28890) | yccA | 3051599..3052258 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| DAECLI1_RS15100 (DAECLI1_28900) | tusE | 3052350..3052679 (+) | 330 | WP_000904443.1 | sulfurtransferase TusE | - |
| DAECLI1_RS15105 (DAECLI1_28910) | yccX | 3052676..3052954 (-) | 279 | WP_000048236.1 | acylphosphatase | - |
| DAECLI1_RS15110 (DAECLI1_28920) | rlmI | 3053049..3054239 (+) | 1191 | WP_000116318.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| DAECLI1_RS15115 (DAECLI1_28930) | hspQ | 3054297..3054614 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| DAECLI1_RS15120 (DAECLI1_28940) | yccU | 3054659..3055072 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| DAECLI1_RS15125 (DAECLI1_28960) | yccT | 3055245..3055907 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| DAECLI1_RS15130 (DAECLI1_28970) | mgsA | 3056003..3056461 (+) | 459 | WP_001295939.1 | methylglyoxal synthase | - |
| DAECLI1_RS15135 (DAECLI1_28980) | helD | 3056493..3058547 (-) | 2055 | WP_001295938.1 | DNA helicase IV | - |
| DAECLI1_RS15140 (DAECLI1_28990) | yccF | 3058670..3059116 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| DAECLI1_RS15145 (DAECLI1_29000) | yccS | 3059126..3061288 (+) | 2163 | WP_000875041.1 | YccS family putative transporter | - |
| DAECLI1_RS15150 (DAECLI1_29010) | sxy/tfoX | 3061251..3061880 (-) | 630 | WP_000839151.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| DAECLI1_RS15155 (DAECLI1_29020) | sulA | 3062099..3062608 (+) | 510 | WP_000288707.1 | SOS-induced cell division inhibitor SulA | - |
| DAECLI1_RS15160 (DAECLI1_29040) | ompA | 3062964..3064016 (+) | 1053 | WP_061089411.1 | porin OmpA | - |
| DAECLI1_RS15165 (DAECLI1_29050) | matP | 3064092..3064544 (-) | 453 | WP_000877153.1 | macrodomain Ter protein MatP | - |
| DAECLI1_RS15170 (DAECLI1_29060) | ycbZ | 3064730..3066490 (+) | 1761 | WP_000156502.1 | Lon protease family protein | - |
| DAECLI1_RS15175 (DAECLI1_29070) | fabA | 3066559..3067077 (+) | 519 | WP_000227926.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| DAECLI1_RS15180 (DAECLI1_29080) | rmf | 3067147..3067314 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| DAECLI1_RS15185 (DAECLI1_29090) | pqiC | 3067570..3068133 (-) | 564 | WP_000759108.1 | membrane integrity-associated transporter subunit PqiC | - |
| DAECLI1_RS15190 (DAECLI1_29100) | pqiB | 3068130..3069770 (-) | 1641 | WP_000445547.1 | intermembrane transport protein PqiB | - |
| DAECLI1_RS15195 (DAECLI1_29110) | pqiA | 3069775..3071028 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24163.08 Da Isoelectric Point: 9.0428
>NTDB_id=71419 DAECLI1_RS15150 WP_000839151.1 3061251..3061880(-) (sxy/tfoX) [Escherichia coli strain SK1144]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=71419 DAECLI1_RS15150 WP_000839151.1 3061251..3061880(-) (sxy/tfoX) [Escherichia coli strain SK1144]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |