Detailed information NTG0714186

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NQD60_RS08275
• Genome accession: NZ_CP102085
• Coordinates: 2070831..2071856 (+)
• Length: 341 a.a.
• NCBI ID: WP_257100430.1
• Uniprot ID: -
• Organism: Mycoavidus sp. SF9855
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2065831..2076856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQD60_RS08250 (NQD60_08250)	-	2066252..2066509 (-)	258	WP_223692442.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NQD60_RS08255 (NQD60_08255)	coaD	2066513..2067040 (-)	528	WP_257100426.1	pantetheine-phosphate adenylyltransferase	-
NQD60_RS08260 (NQD60_08260)	rsmD	2067037..2067741 (-)	705	WP_257100427.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NQD60_RS08265 (NQD60_08265)	-	2067765..2069123 (-)	1359	WP_257100428.1	pitrilysin family protein	-
NQD60_RS08270 (NQD60_08270)	-	2069123..2070616 (-)	1494	WP_257100429.1	pitrilysin family protein	-
NQD60_RS08275 (NQD60_08275)	pilA	2070831..2071856 (+)	1026	WP_257100430.1	signal recognition particle-docking protein FtsY	Machinery gene
NQD60_RS08280 (NQD60_08280)	-	2071876..2072574 (-)	699	WP_257100431.1	fumarylacetoacetate hydrolase family protein	-
NQD60_RS08285 (NQD60_08285)	rpoH	2072761..2073636 (+)	876	Protein_1612	RNA polymerase sigma factor RpoH	-
NQD60_RS08290 (NQD60_08290)	clpA	2073661..2075958 (-)	2298	WP_257100432.1	ATP-dependent Clp protease ATP-binding subunit ClpA	-
NQD60_RS08295 (NQD60_08295)	clpS	2075955..2076269 (-)	315	WP_257100433.1	ATP-dependent Clp protease adapter ClpS	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 36340.78 Da
• Isoelectric Point: 7.4765

>NTDB_id=714186 NQD60_RS08275 WP_257100430.1 2070831..2071856(+) (pilA) [Mycoavidus sp. SF9855]
MFSFFKNLNKGSTSTPAPSEPENKSKASTQAKNLPSTEPTANRSTSWVSRLKSGLAKTRNSFTSIFAGAKVDEALFEELE
AALLMADTGIEASDFLLSALRQKVSAERLNEGEAVKSALRALLIDLLKPLEHTLVLGRAQPLVMMITGVNGAGKTTSIGK
LAQHLQQHGQSVLLAAGDTFRAAAHEQLALWGERNQINVISQQSGDPAAVIFDALNAARARKLDILMADTAGRLPTQLHL
MEELKKIKRVIGKAMDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGV
GEQIDDLQPFCAAEFASALLD

Nucleotide

• Length: 1026 bp

>NTDB_id=714186 NQD60_RS08275 WP_257100430.1 2070831..2071856(+) (pilA) [Mycoavidus sp. SF9855]
ATGTTTAGCTTCTTCAAAAATCTTAATAAGGGCTCAACATCGACCCCGGCACCTTCTGAGCCAGAGAATAAATCAAAAGC
CAGCACTCAGGCTAAAAATCTGCCGAGCACAGAGCCTACTGCCAACCGCTCAACCTCCTGGGTAAGCCGACTAAAATCAG
GTTTAGCGAAGACGCGTAACAGCTTTACCAGCATTTTTGCTGGCGCAAAAGTCGATGAGGCCCTTTTTGAAGAGCTCGAA
GCTGCGCTATTAATGGCCGACACAGGCATTGAAGCGAGCGATTTTCTACTGAGTGCTCTACGTCAGAAAGTAAGCGCTGA
GCGGCTGAATGAAGGTGAAGCAGTCAAATCTGCCTTGCGCGCGCTCTTGATTGATTTATTAAAACCACTTGAGCACACAT
TAGTACTGGGCCGCGCGCAACCCTTGGTGATGATGATCACGGGCGTCAACGGCGCAGGTAAAACCACCAGCATTGGCAAA
CTGGCCCAACATTTACAGCAACACGGACAATCTGTGTTGCTGGCCGCGGGTGACACTTTTCGCGCCGCCGCACACGAACA
GCTTGCACTGTGGGGTGAGCGTAATCAGATCAATGTGATTTCACAGCAAAGCGGTGACCCCGCCGCGGTCATTTTCGACG
CCCTTAACGCCGCGCGCGCACGTAAGCTAGATATACTCATGGCGGACACCGCTGGGCGCCTACCGACACAATTACATTTG
ATGGAGGAGTTAAAAAAGATCAAACGCGTCATCGGTAAGGCGATGGACGGGGCCCCGCACGAAGTGCTGCTGGTGATTGA
CGCAAATACCGGACAGAATGCCCTCGCGCAGGTGAAAGCTTTTGATGATGCCCTTGGTCTCACCGGATTGATTGTGACCA
AGCTTGATGGCACGGCTAAAGGCGGCATCCTCGCCGCGATTGCGCGACAGCGGCCTATCCCCGTGTACTTCATTGGCGTG
GGAGAACAAATTGATGATCTACAGCCGTTTTGCGCCGCAGAGTTCGCCAGCGCGTTGCTGGATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (142-340)

• SRP54-type protein, helical bundle domain (SRP54_N) (60-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	61.238	90.029	0.551