Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NL406_RS17340 Genome accession   NZ_CP116913
Coordinates   3383536..3384141 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MLI023K1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3378536..3389141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL406_RS17320 (NL406_017330) aes 3378677..3379636 (+) 960 WP_101800726.1 acetyl esterase -
  NL406_RS17325 (NL406_017335) hemH 3379633..3380595 (-) 963 WP_001250088.1 ferrochelatase -
  NL406_RS17330 (NL406_017340) adk 3380727..3381371 (-) 645 WP_001220233.1 adenylate kinase -
  NL406_RS17335 (NL406_017345) htpG 3381552..3383426 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NL406_RS17340 (NL406_017350) recR 3383536..3384141 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NL406_RS17345 (NL406_017355) ybaB 3384141..3384470 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NL406_RS17350 (NL406_017360) dnaX 3384523..3386454 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  NL406_RS17355 (NL406_017365) apt 3386583..3387134 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NL406_RS17360 (NL406_017370) ybaN 3387287..3387664 (-) 378 WP_001188905.1 DUF454 family protein -
  NL406_RS17365 (NL406_017375) priC 3387734..3388285 (+) 552 WP_187770245.1 primosomal replication protein N'' -
  NL406_RS17370 (NL406_017380) rsmS 3388275..3388436 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  NL406_RS17375 (NL406_017385) - 3388489..3388587 (-) 99 Protein_3254 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=714156 NL406_RS17340 WP_001195025.1 3383536..3384141(-) (recR) [Escherichia coli strain MLI023K1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=714156 NL406_RS17340 WP_001195025.1 3383536..3384141(-) (recR) [Escherichia coli strain MLI023K1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443