Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NP948_RS03885 Genome accession   NZ_CP102070
Coordinates   778567..780240 (+) Length   557 a.a.
NCBI ID   WP_002401558.1    Uniprot ID   -
Organism   Enterococcus faecalis strain JF3A-4253     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773567..785240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP948_RS03855 - 774231..774461 (+) 231 WP_002395761.1 exodeoxyribonuclease VII small subunit -
  NP948_RS03860 - 774461..775342 (+) 882 WP_002369880.1 polyprenyl synthetase family protein -
  NP948_RS03865 - 775356..776171 (+) 816 WP_002361403.1 TlyA family RNA methyltransferase -
  NP948_RS03870 - 776537..777103 (+) 567 WP_016627306.1 matrixin family metalloprotease -
  NP948_RS03875 - 777108..777968 (+) 861 WP_010706683.1 hypothetical protein -
  NP948_RS03880 - 778100..778549 (+) 450 WP_002358881.1 arginine repressor -
  NP948_RS03885 recN 778567..780240 (+) 1674 WP_002401558.1 DNA repair protein RecN Machinery gene
  NP948_RS03890 - 780331..780441 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  NP948_RS03895 - 780509..781474 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  NP948_RS03900 - 781719..782111 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  NP948_RS03905 mraZ 782345..782830 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  NP948_RS03910 rsmH 782845..783801 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NP948_RS03915 ftsL 783818..784225 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62689.08 Da        Isoelectric Point: 4.5772

>NTDB_id=714118 NP948_RS03885 WP_002401558.1 778567..780240(+) (recN) [Enterococcus faecalis strain JF3A-4253]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALTLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=714118 NP948_RS03885 WP_002401558.1 778567..780240(+) (recN) [Enterococcus faecalis strain JF3A-4253]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGATT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAATGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCCTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCCAGGTTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAGGCGGCTCATCAACAAGCGTTGACTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCGGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGTGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATTGTGGCGGGGAGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496