Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FFG67_RS22455 Genome accession   NZ_AP024123
Coordinates   4650384..4650989 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain KS-NP019     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4645384..4655989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFG67_RS22425 (BvCmsNSNP030_4395) rsmS 4646089..4646250 (-) 162 WP_001460555.1 pleiotropic regulatory protein RsmS -
  FFG67_RS22430 (BvCmsNSNP030_4396) priC 4646264..4646791 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  FFG67_RS22435 (BvCmsNSNP030_4397) ybaN 4646861..4647238 (+) 378 WP_001188905.1 DUF454 family protein -
  FFG67_RS22440 (BvCmsNSNP030_4398) apt 4647391..4647942 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FFG67_RS22445 (BvCmsNSNP030_4399) dnaX 4648071..4650002 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FFG67_RS22450 (BvCmsNSNP030_4400) ybaB 4650055..4650384 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FFG67_RS22455 (BvCmsNSNP030_4401) recR 4650384..4650989 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FFG67_RS22460 (BvCmsNSNP030_4402) htpG 4651099..4652973 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  FFG67_RS22465 (BvCmsNSNP030_4403) adk 4653154..4653798 (+) 645 WP_001220233.1 adenylate kinase -
  FFG67_RS22470 (BvCmsNSNP030_4404) hemH 4654034..4654996 (+) 963 WP_001250105.1 ferrochelatase -
  FFG67_RS22475 (BvCmsNSNP030_4405) aes 4654993..4655952 (-) 960 WP_063113573.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=71400 FFG67_RS22455 WP_001195025.1 4650384..4650989(+) (recR) [Escherichia coli strain KS-NP019]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=71400 FFG67_RS22455 WP_001195025.1 4650384..4650989(+) (recR) [Escherichia coli strain KS-NP019]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment