Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NQD66_RS04025 Genome accession   NZ_CP101995
Coordinates   725506..726315 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain BCJB2983     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 720506..731315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD66_RS04000 (NQD66_03995) - 720835..721530 (-) 696 WP_000173638.1 amino acid ABC transporter permease -
  NQD66_RS04005 (NQD66_04000) - 721543..722343 (-) 801 WP_000946173.1 transporter substrate-binding domain-containing protein -
  NQD66_RS04010 (NQD66_04005) - 722355..723110 (-) 756 WP_000053146.1 amino acid ABC transporter ATP-binding protein -
  NQD66_RS04015 (NQD66_04010) vicR 723450..724160 (+) 711 WP_000722052.1 response regulator YycF Regulator
  NQD66_RS04020 (NQD66_04015) vicK 724153..725502 (+) 1350 WP_001065465.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NQD66_RS04025 (NQD66_04020) vicX 725506..726315 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  NQD66_RS04030 (NQD66_04025) - 726318..726686 (+) 369 WP_000719384.1 YbaN family protein -
  NQD66_RS04035 (NQD66_04030) rnc 726861..727547 (+) 687 WP_000661526.1 ribonuclease III -
  NQD66_RS04040 (NQD66_04035) smc 727555..731094 (+) 3540 WP_000478786.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=713962 NQD66_RS04025 WP_001289498.1 725506..726315(+) (vicX) [Streptococcus agalactiae strain BCJB2983]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=713962 NQD66_RS04025 WP_001289498.1 725506..726315(+) (vicX) [Streptococcus agalactiae strain BCJB2983]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766