Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   NQD66_RS02725 Genome accession   NZ_CP101995
Coordinates   491940..493013 (+) Length   357 a.a.
NCBI ID   WP_000790647.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB2983     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 486940..498013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD66_RS02695 (NQD66_02690) - 487833..488897 (+) 1065 WP_000021305.1 MmcQ/YjbR family DNA-binding protein -
  NQD66_RS02700 (NQD66_02695) asnA 489010..490002 (+) 993 WP_000748011.1 aspartate--ammonia ligase -
  NQD66_RS02705 (NQD66_02700) - 490047..490496 (-) 450 WP_000592256.1 thiol reductase thioredoxin -
  NQD66_RS02710 (NQD66_02705) rsmD 490627..491166 (+) 540 WP_001266830.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NQD66_RS02715 (NQD66_02710) - 491178..491468 (+) 291 WP_000384889.1 hypothetical protein -
  NQD66_RS02720 (NQD66_02715) coaD 491465..491950 (+) 486 WP_000161892.1 pantetheine-phosphate adenylyltransferase -
  NQD66_RS02725 (NQD66_02720) sepM 491940..493013 (+) 1074 WP_000790647.1 SepM family pheromone-processing serine protease Regulator
  NQD66_RS02730 (NQD66_02725) - 493088..494422 (+) 1335 WP_000137512.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  NQD66_RS02735 (NQD66_02730) - 494492..495070 (+) 579 WP_001224502.1 YutD-like domain-containing protein -
  NQD66_RS02740 (NQD66_02735) rlmN 495121..496227 (+) 1107 WP_001124994.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  NQD66_RS02745 (NQD66_02740) - 496227..496742 (+) 516 WP_000919803.1 VanZ family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 39165.33 Da        Isoelectric Point: 10.4286

>NTDB_id=713953 NQD66_RS02725 WP_000790647.1 491940..493013(+) (sepM) [Streptococcus agalactiae strain BCJB2983]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVFYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHL
ADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEG
VGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKV
QTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=713953 NQD66_RS02725 WP_000790647.1 491940..493013(+) (sepM) [Streptococcus agalactiae strain BCJB2983]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTACTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGACTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTATCTGTTAGTCAAGCAACGCCA
GCTCAGGTTTTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAATGAGTCCGTCTATCAAGCTTTAAAGTTAGCTAATA
AGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAGCTAAAAATTCGACATTTAAAGATAGATTACATTTA
GCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCT
AGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCAGTTGGTAAAGTTATTAAACTATCAAACG
GTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTGATGTTCCTGTGGACTTTAATACTGAAGGT
GTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTAGTTAAAGAAGATTTACGTAAAGGACG
TAAGATTGCAGGCACTGGTACTATTGAGCAAAATGGGCATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAG
CGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAATGCTAAAAAAGGCAAAACAAAGGTT
CAGACGAATTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCA
GCAAGCTATTGATTATTTGAAAAAAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.732

94.958

0.653