Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PPM45_RS17125 Genome accession   NZ_CP116870
Coordinates   3333210..3333923 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3328210..3338923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS17105 ghrB 3328354..3329331 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  PPM45_RS17110 psdB 3329369..3331309 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  PPM45_RS17115 psdA 3331284..3332063 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  PPM45_RS17120 psdS 3332146..3333216 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  PPM45_RS17125 braR 3333210..3333923 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  PPM45_RS17130 yvzJ 3334070..3334279 (+) 210 WP_003243327.1 lipoprotein -
  PPM45_RS17135 yvcN 3334315..3335079 (-) 765 WP_009968228.1 arylamine N-acetyltransferase family protein -
  PPM45_RS17140 crh 3335080..3335337 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  PPM45_RS17145 whiA 3335361..3336311 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  PPM45_RS17150 mgfK 3336334..3337287 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  PPM45_RS17155 rapZ 3337289..3338176 (-) 888 WP_003243903.1 RNase adapter RapZ -
  PPM45_RS17160 rppI 3338201..3338677 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=713898 PPM45_RS17125 WP_003244535.1 3333210..3333923(-) (braR) [Bacillus subtilis subsp. subtilis strain Master_strain]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=713898 PPM45_RS17125 WP_003244535.1 3333210..3333923(-) (braR) [Bacillus subtilis subsp. subtilis strain Master_strain]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43