Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PPM45_RS09375 Genome accession   NZ_CP116870
Coordinates   1862920..1863537 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857920..1868537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS09345 yndJ 1858234..1859874 (+) 1641 WP_003231612.1 YndJ family protein -
  PPM45_RS09350 - 1859962..1860276 (+) 315 WP_003245621.1 hypothetical protein -
  PPM45_RS09355 pghL 1860502..1861260 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  PPM45_RS09360 - 1861287..1861736 (-) 450 WP_003245454.1 YndM family protein -
  PPM45_RS09365 fosM 1861944..1862378 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  PPM45_RS09370 - 1862287..1862583 (+) 297 WP_223257629.1 hypothetical protein -
  PPM45_RS09375 dinR/lexA 1862920..1863537 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  PPM45_RS09380 yneA 1863687..1864004 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  PPM45_RS09385 dinL 1864023..1864676 (+) 654 WP_003231596.1 YneB family resolvase-like protein -
  PPM45_RS09390 ynzC 1864740..1864973 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  PPM45_RS09395 recP/tkt 1865142..1867145 (+) 2004 WP_003245397.1 transketolase Machinery gene
  PPM45_RS09400 sirA 1867298..1867744 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  PPM45_RS09405 yneF 1867830..1868048 (+) 219 WP_003221221.1 YneF family protein -
  PPM45_RS09410 ynzD 1868122..1868295 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=713845 PPM45_RS09375 WP_003238209.1 1862920..1863537(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain Master_strain]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=713845 PPM45_RS09375 WP_003238209.1 1862920..1863537(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGTTCTACTGTCCACGGCCATTTGGCCCGTTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1