Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J71_RS02185 Genome accession   NZ_AP018783
Coordinates   432035..432331 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-V-3 isolate 15H03     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 427035..437331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J71_RS09775 - 428678..428722 (+) 45 Protein_415 hypothetical protein -
  K6J71_RS09780 - 428718..428762 (+) 45 Protein_416 hypothetical protein -
  K6J71_RS02175 (CHBNV3_04170) - 428785..431589 (+) 2805 Protein_417 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J71_RS02180 (CHBNV3_04180) - 431860..432042 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J71_RS02185 (CHBNV3_04190) HI0659 432035..432331 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  K6J71_RS02190 (CHBNV3_04200) - 432488..434404 (+) 1917 WP_114877247.1 ABC transporter ATP-binding protein -
  K6J71_RS02195 (CHBNV3_04210) - 434414..434950 (+) 537 WP_103708099.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K6J71_RS02200 (CHBNV3_04220) - 434966..435517 (+) 552 WP_103708098.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J71_RS02205 (CHBNV3_04230) aroE 435521..436327 (+) 807 WP_221282176.1 shikimate dehydrogenase -
  K6J71_RS02210 (CHBNV3_04240) - 436339..437091 (+) 753 WP_005667608.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71379 K6J71_RS02185 WP_005650837.1 432035..432331(+) (HI0659) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71379 K6J71_RS02185 WP_005650837.1 432035..432331(+) (HI0659) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTTCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment