Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PPM34_RS19775 Genome accession   NZ_CP116869
Coordinates   3843652..3844500 (-) Length   282 a.a.
NCBI ID   WP_003226832.1    Uniprot ID   P26497
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838652..3849500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS19755 yyaE 3839166..3841169 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  PPM34_RS19760 yyzM 3841220..3841426 (-) 207 WP_003226838.1 DUF951 domain-containing protein -
  PPM34_RS19765 - 3841520..3842536 (-) 1017 WP_010886647.1 membrane protein -
  PPM34_RS19770 yyaC 3842996..3843613 (+) 618 WP_003243890.1 spore protease YyaC -
  PPM34_RS19775 spo0J 3843652..3844500 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J Regulator
  PPM34_RS19780 soj 3844493..3845254 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  PPM34_RS19785 yyaB 3845502..3845942 (+) 441 WP_003244005.1 PH domain-containing protein -
  PPM34_RS19790 noc 3845993..3846844 (-) 852 WP_003226829.1 nucleoid occlusion protein -
  PPM34_RS19795 rsmG 3846966..3847685 (-) 720 WP_003243029.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32210.16 Da        Isoelectric Point: 8.3881

>NTDB_id=713765 PPM34_RS19775 WP_003226832.1 3843652..3844500(-) (spo0J) [Bacillus subtilis subsp. subtilis strain MGP001]
MAKGLGKGINALFNQVDLSEETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGERR
FRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLT
LPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESY
LQNYFGTTVNIKRQKKKGKIEIEFFSNEDLDRILELLSERES

Nucleotide


Download         Length: 849 bp        

>NTDB_id=713765 PPM34_RS19775 WP_003226832.1 3843652..3844500(-) (spo0J) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGGCTAAAGGCCTTGGAAAAGGGATTAATGCGTTATTTAATCAGGTAGATTTGTCTGAAGAGACAGTTGAAGAAATTAA
AATTGCCGATTTACGCCCTAATCCTTATCAGCCAAGAAAACACTTTGATGACGAGGCATTAGCTGAACTAAAAGAATCTG
TGCTGCAGCATGGCATTCTTCAGCCGCTTATCGTCAGAAAATCTTTAAAAGGCTATGATATTGTTGCGGGTGAACGGCGT
TTTCGAGCGGCAAAGCTGGCAGGTTTAGATACAGTTCCGGCCATTGTCCGTGAATTATCAGAGGCGTTAATGAGGGAAAT
TGCTTTATTAGAAAACCTTCAGCGTGAAGATTTATCTCCGCTTGAAGAGGCTCAGGCATATGACTCCCTTTTGAAACACT
TAGATCTCACACAAGAGCAGCTTGCCAAACGTCTTGGGAAAAGCAGACCGCATATTGCGAATCATTTAAGACTGCTGACA
CTGCCAGAAAATATTCAACAGCTTATTGCCGAAGGCACGCTTTCTATGGGACATGGACGCACGCTTCTTGGCTTAAAAAA
CAAAAATAAGCTTGAACCGCTGGTACAAAAAGTGATTGCGGAGCAGCTCAATGTTCGCCAACTTGAGCAGCTGATTCAGC
AGTTGAATCAGAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTGAAAGATGCGGTTCTAAAAGAACGGGAATCCTAT
CTCCAAAATTATTTTGGAACAACAGTTAATATTAAAAGACAGAAGAAAAAAGGCAAAATCGAAATTGAATTTTTCTCTAA
TGAAGACCTTGACCGGATTTTAGAGCTTTTGTCTGAACGAGAATCATAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(163-214)

ParB/Sulfiredoxin domain (ParB_N)

(24-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5NOC
  PDB 6SDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.923

92.199

0.387