Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PPM34_RS16465 Genome accession   NZ_CP116869
Coordinates   3205059..3205772 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200059..3210772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS16445 ghrB 3200203..3201180 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  PPM34_RS16450 psdB 3201218..3203158 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  PPM34_RS16455 psdA 3203133..3203912 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  PPM34_RS16460 psdS 3203995..3205065 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  PPM34_RS16465 braR 3205059..3205772 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  PPM34_RS16470 yvzJ 3205919..3206128 (+) 210 WP_003243327.1 lipoprotein -
  PPM34_RS16475 yvcN 3206164..3206928 (-) 765 WP_009968228.1 arylamine N-acetyltransferase family protein -
  PPM34_RS16480 crh 3206929..3207186 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  PPM34_RS16485 whiA 3207210..3208160 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  PPM34_RS16490 mgfK 3208183..3209136 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  PPM34_RS16495 rapZ 3209138..3210025 (-) 888 WP_003243903.1 RNase adapter RapZ -
  PPM34_RS16500 rppI 3210050..3210526 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=713745 PPM34_RS16465 WP_003244535.1 3205059..3205772(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP001]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=713745 PPM34_RS16465 WP_003244535.1 3205059..3205772(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP001]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43