Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J59_RS05060 Genome accession   NZ_AP018782
Coordinates   1003886..1006252 (+) Length   788 a.a.
NCBI ID   WP_005667985.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-2 isolate 13H37     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998886..1011252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J59_RS05035 (CHBNV2_09520) - 999233..1000531 (-) 1299 WP_005667976.1 N-acetylmuramoyl-L-alanine amidase -
  K6J59_RS05040 (CHBNV2_09530) tsaE 1000539..1001015 (-) 477 WP_005667978.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J59_RS05045 (CHBNV2_09540) folK 1001091..1001573 (-) 483 WP_005667981.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J59_RS05050 (CHBNV2_09550) pcnB 1001583..1002941 (-) 1359 WP_005667983.1 polynucleotide adenylyltransferase PcnB -
  K6J59_RS05055 (CHBNV2_09560) dksA 1003190..1003627 (-) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  K6J59_RS05060 (CHBNV2_09570) rec2 1003886..1006252 (+) 2367 WP_005667985.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J59_RS05065 (CHBNV2_09580) msbA 1006293..1008056 (+) 1764 WP_005649789.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J59_RS05070 (CHBNV2_09590) lpxK 1008129..1009127 (+) 999 WP_005649790.1 tetraacyldisaccharide 4'-kinase -
  K6J59_RS05075 (CHBNV2_09600) kdsB 1009198..1009962 (+) 765 WP_005667990.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89469.99 Da        Isoelectric Point: 9.9562

>NTDB_id=71364 K6J59_RS05060 WP_005667985.1 1003886..1006252(+) (rec2) [Haemophilus influenzae strain CHBN-V-2 isolate 13H37]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLSQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITVVGTVKSAVKIAEVSSLRAAKLQQVKKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPLQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLLLWYRYMPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
ISSSSWQIKRARFFTLNLSKPLLKNERINVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=71364 K6J59_RS05060 WP_005667985.1 1003886..1006252(+) (rec2) [Haemophilus influenzae strain CHBN-V-2 isolate 13H37]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATCACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGAGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACTGTTGTTGGAACGGTAAAAAGTGCGGTAAAAATTGCGGAGGTTTCATCATTGCGTGCAGCAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATCGCCTTAGCTTTTGGTGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACTAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTGTTCTTTCCTACGCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCCTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGAGCGGTTGGGTGTTTGCTCCTCTGGTATCGTTA
TATGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTATTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTACCGAGAACCCGAG
ATTTCATCATCAAGCTGGCAAATAAAACGAGCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACGATTTTGTTGTTTAAACAATTGAGCAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

97.589

100

0.976

Multiple sequence alignment