Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   PPM34_RS01800 Genome accession   NZ_CP116869
Coordinates   347915..348349 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342915..353349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS01770 ydaD 343565..344425 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  PPM34_RS01775 lyxE 344441..344944 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  PPM34_RS01780 ydaF 345030..345581 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  PPM34_RS01785 ydaG 345659..346081 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  PPM34_RS01790 amj 346587..347396 (+) 810 WP_003234394.1 lipid II flippase Amj -
  PPM34_RS01795 ydzA 347440..347730 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  PPM34_RS01800 lrpC 347915..348349 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  PPM34_RS01805 topB 348414..350597 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  PPM34_RS01810 ephJ 350800..351888 (+) 1089 WP_003246551.1 lipoprotein -
  PPM34_RS01815 epsK 351869..352720 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=713634 PPM34_RS01800 WP_003246585.1 347915..348349(+) (lrpC) [Bacillus subtilis subsp. subtilis strain MGP001]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=713634 PPM34_RS01800 WP_003246585.1 347915..348349(+) (lrpC) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1