Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   NPS16_RS01220 Genome accession   NZ_CP101986
Coordinates   265279..266331 (+) Length   350 a.a.
NCBI ID   WP_002293618.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260279..271331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS01205 (NPS16_01205) - 261558..263207 (+) 1650 WP_002265823.1 peptide ABC transporter substrate-binding protein -
  NPS16_RS01210 (NPS16_01210) - 263313..264227 (+) 915 WP_258969045.1 ABC transporter permease -
  NPS16_RS01215 (NPS16_01215) - 264238..265269 (+) 1032 WP_002263989.1 ABC transporter permease -
  NPS16_RS01220 (NPS16_01220) oppD 265279..266331 (+) 1053 WP_002293618.1 ABC transporter ATP-binding protein Regulator
  NPS16_RS01225 (NPS16_01225) amiF 266324..267250 (+) 927 WP_002267002.1 ABC transporter ATP-binding protein Regulator
  NPS16_RS01230 (NPS16_01230) - 267803..268405 (+) 603 WP_002293619.1 nitroreductase family protein -
  NPS16_RS01235 (NPS16_01235) gshAB 268482..270803 (-) 2322 WP_193754107.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39190.68 Da        Isoelectric Point: 5.5768

>NTDB_id=713626 NPS16_RS01220 WP_002293618.1 265279..266331(+) (oppD) [Streptococcus mutans strain COCC33-14]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILVADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=713626 NPS16_RS01220 WP_002293618.1 265279..266331(+) (oppD) [Streptococcus mutans strain COCC33-14]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTTAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCACCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTGTTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.714

100

0.997
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.441

99.714

0.543
  amiE Streptococcus thermophilus LMD-9

54.441

99.714

0.543