Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NPS17_RS09420 Genome accession   NZ_CP101985
Coordinates   1977019..1977732 (+) Length   237 a.a.
NCBI ID   WP_226730612.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972019..1982732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS09405 (NPS17_09405) - 1972095..1972961 (-) 867 WP_002266265.1 Rgg/GadR/MutR family transcriptional regulator -
  NPS17_RS09410 (NPS17_09410) treC 1973224..1974852 (-) 1629 WP_168749565.1 alpha,alpha-phosphotrehalase -
  NPS17_RS09415 (NPS17_09415) treP 1974878..1976845 (-) 1968 WP_019317558.1 PTS system trehalose-specific EIIBC component -
  NPS17_RS09420 (NPS17_09420) treR 1977019..1977732 (+) 714 WP_226730612.1 trehalose operon repressor Regulator
  NPS17_RS09425 (NPS17_09425) - 1977997..1979202 (-) 1206 WP_258968998.1 abortive infection system toxin AbiGii family protein -
  NPS17_RS09430 (NPS17_09430) abiGI 1979203..1980096 (-) 894 WP_168746199.1 abortive phage resistance protein AbiGI -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27812.19 Da        Isoelectric Point: 9.8454

>NTDB_id=713614 NPS17_RS09420 WP_226730612.1 1977019..1977732(+) (treR) [Streptococcus mutans strain COCC33-14R]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIVDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAERSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=713614 NPS17_RS09420 WP_226730612.1 1977019..1977732(+) (treR) [Streptococcus mutans strain COCC33-14R]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTGTTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACGTTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992