Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PPM30_RS18860 Genome accession   NZ_CP116868
Coordinates   3621836..3622525 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616836..3627525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS18840 yxeA 3617741..3618088 (-) 348 WP_003227084.1 YxeA family protein -
  PPM30_RS18845 yxdM 3618102..3619970 (-) 1869 WP_003244410.1 ABC transporter permease YxdM -
  PPM30_RS18850 yxdL 3619945..3620718 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  PPM30_RS18855 yxdK 3620862..3621839 (-) 978 WP_003243885.1 two-component system sensor histidine kinase YxdK -
  PPM30_RS18860 braR 3621836..3622525 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  PPM30_RS18865 iolJ 3622633..3623505 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  PPM30_RS18870 iolI 3623526..3624362 (-) 837 WP_003244546.1 2-keto-myo-inositol isomerase -
  PPM30_RS18875 iolH 3624448..3625317 (-) 870 WP_003243149.1 sugar phosphate isomerase/epimerase family protein -
  PPM30_RS18880 iolG 3625337..3626371 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=713612 PPM30_RS18860 WP_003243527.1 3621836..3622525(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP003]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=713612 PPM30_RS18860 WP_003243527.1 3621836..3622525(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP003]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406