Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NPS17_RS03020 Genome accession   NZ_CP101985
Coordinates   624551..626350 (+) Length   599 a.a.
NCBI ID   WP_002272061.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 619551..631350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS02995 (NPS17_02995) - 620791..621759 (+) 969 WP_258969079.1 alcohol dehydrogenase catalytic domain-containing protein -
  NPS17_RS03000 (NPS17_03000) - 621792..621919 (-) 128 Protein_557 ArsR/SmtB family transcription factor -
  NPS17_RS03005 (NPS17_03005) - 622004..622285 (+) 282 Protein_558 hypothetical protein -
  NPS17_RS03010 (NPS17_03010) - 622391..623284 (+) 894 WP_002267117.1 alpha/beta hydrolase -
  NPS17_RS03015 (NPS17_03015) - 623591..624529 (+) 939 WP_002272062.1 competence protein CoiA -
  NPS17_RS03020 (NPS17_03020) pepF 624551..626350 (+) 1800 WP_002272061.1 oligoendopeptidase F Regulator
  NPS17_RS03025 (NPS17_03025) - 626567..627184 (+) 618 WP_002261895.1 HAD-IA family hydrolase -
  NPS17_RS03030 (NPS17_03030) - 627234..627941 (+) 708 WP_002275166.1 O-methyltransferase -
  NPS17_RS03035 (NPS17_03035) prsA 628003..629004 (+) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  NPS17_RS03040 (NPS17_03040) - 629243..629743 (+) 501 WP_002265403.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69751.32 Da        Isoelectric Point: 4.7752

>NTDB_id=713568 NPS17_RS03020 WP_002272061.1 624551..626350(+) (pepF) [Streptococcus mutans strain COCC33-14R]
MSDNRSHIEEKYQWDLTSIFPNDQTWEKEEKSLAKDLEIAVKRAGHLLDSSQSLLELTELYLALSRRLEKLYVYASMKND
QDTTVSYYQELQAKATALIAKFNQTFAFYEPEFMLLSTEKYQDFLADCPDLLPYQHFFEKLFKQKKHVLSQKEEALLAEA
SEIFGAAGETFEILDNADIIFPWVKDETGEEVELSHGNFISLMESKNRKVRQEAYKAMYSIYEQYQHTYAKTLQTNVKVN
NFQAKIRNYKSAREAALAANFIPETVYDTLVEAVHNHLPLLQRYVKLRQNVLGLDDLKMYDIYVPLSEMDMTFTYEAALD
KAEEVLAIFGRDYAERVHRAFRERWIDVRVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEATDEKQRFAILNHYLDGFKGTVFRQTQFAEFEDLIYRADQAGDVLTSDY
LNNLYADLNEKYYGLSKKNNPEIQYEWARIPHFYYNFYVYQYATGFAAASFLAHKIVHGNQEDKDKYLNYLKAGNSDYPL
NVIAKAGLDMTESTYIDQAFKVFEERLIELEELVEKGID

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=713568 NPS17_RS03020 WP_002272061.1 624551..626350(+) (pepF) [Streptococcus mutans strain COCC33-14R]
ATGTCTGATAATCGCAGTCATATTGAAGAAAAATACCAATGGGATTTGACCAGCATTTTTCCAAACGATCAAACTTGGGA
AAAAGAGGAGAAATCTTTAGCTAAGGATTTGGAAATAGCCGTTAAAAGAGCAGGTCATCTGCTTGACTCCAGTCAAAGTC
TGCTGGAGCTCACAGAACTTTATCTGGCTTTGAGCCGTCGTTTGGAAAAACTTTATGTTTATGCTTCTATGAAGAATGAC
CAAGACACCACGGTCAGTTACTATCAAGAATTACAAGCTAAGGCAACAGCCTTGATCGCTAAATTTAATCAGACTTTTGC
CTTCTATGAGCCTGAATTTATGCTGTTATCAACAGAAAAATATCAGGATTTTTTGGCAGATTGTCCGGATTTATTGCCTT
ATCAACATTTTTTTGAAAAATTATTCAAACAAAAAAAGCATGTTCTTTCTCAAAAGGAAGAGGCACTTTTGGCTGAAGCC
AGTGAAATTTTTGGTGCTGCTGGTGAAACCTTTGAAATTCTTGACAATGCCGATATTATCTTTCCTTGGGTAAAAGACGA
GACAGGAGAAGAAGTTGAACTATCTCATGGTAATTTCATCAGTTTGATGGAATCCAAAAACCGCAAAGTTCGACAAGAAG
CTTATAAGGCCATGTACAGCATTTATGAGCAGTATCAACACACCTATGCTAAAACGCTGCAAACCAATGTTAAAGTTAAT
AATTTTCAAGCGAAAATCAGAAACTATAAGAGTGCGCGTGAAGCTGCTCTGGCAGCTAATTTTATTCCCGAAACTGTTTA
TGACACTTTAGTAGAAGCGGTCCATAATCACTTACCTTTGTTACAGCGTTATGTGAAGCTAAGGCAAAACGTTTTAGGCC
TTGATGATCTTAAGATGTATGATATTTACGTACCACTCTCAGAAATGGATATGACTTTTACTTATGAAGCAGCCTTGGAC
AAAGCAGAAGAAGTGTTAGCTATTTTTGGGCGAGACTATGCTGAGCGTGTGCATCGTGCATTTAGGGAGCGTTGGATTGA
TGTACGAGTCAATAAAGGCAAGCGTTCAGGCGCTTATTCAGGTGGTTCCTATGACACCAATGCTTTTATATTGCTTAACT
GGCAGGATACTTTGGATAACCTCTTCACTCTTGTGCATGAAACAGGACATTCTTTGCATTCTACTTTTACACGTGAAAAC
CAACCCTATGTTTATGGTGATTATTCTATTTTTTTGGCAGAAATTGCTTCGACAACCAATGAAAATATTTTGACAGAGAC
ACTGCTCAAGGAAGCAACAGATGAGAAACAACGTTTTGCGATTTTGAATCATTATCTTGATGGTTTCAAAGGAACGGTTT
TCCGCCAAACACAATTTGCAGAATTTGAAGACTTGATTTATAGGGCTGATCAAGCAGGTGACGTTTTGACCAGTGATTAT
TTGAATAATCTCTATGCGGATCTCAATGAAAAATACTATGGTTTAAGCAAGAAAAATAATCCGGAAATTCAGTATGAATG
GGCTAGGATTCCGCATTTCTATTACAATTTTTATGTTTATCAGTATGCCACAGGCTTTGCTGCAGCTAGTTTTTTGGCTC
ACAAAATTGTTCATGGCAATCAAGAAGATAAGGACAAATATCTCAATTATCTCAAAGCTGGCAATTCAGACTATCCCCTC
AATGTTATTGCTAAAGCAGGTCTTGATATGACTGAGTCGACCTATATTGACCAAGCCTTCAAAGTCTTTGAAGAACGGTT
AATAGAGTTGGAAGAGTTGGTCGAAAAAGGAATTGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.231

99.833

0.691