Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PPM30_RS08555 Genome accession   NZ_CP116868
Coordinates   1646226..1646843 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641226..1651843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS08525 yndJ 1641540..1643180 (+) 1641 WP_003231612.1 YndJ family protein -
  PPM30_RS08530 - 1643268..1643582 (+) 315 WP_003245621.1 hypothetical protein -
  PPM30_RS08535 pghL 1643808..1644566 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  PPM30_RS08540 - 1644593..1645042 (-) 450 WP_003245454.1 YndM family protein -
  PPM30_RS08545 fosM 1645250..1645684 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  PPM30_RS08550 - 1645593..1645889 (+) 297 WP_223257629.1 hypothetical protein -
  PPM30_RS08555 dinR/lexA 1646226..1646843 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  PPM30_RS08560 yneA 1646993..1647310 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  PPM30_RS08565 dinL 1647329..1647982 (+) 654 WP_003231596.1 YneB family resolvase-like protein -
  PPM30_RS08570 ynzC 1648046..1648279 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  PPM30_RS08575 recP/tkt 1648448..1650451 (+) 2004 WP_003245397.1 transketolase Machinery gene
  PPM30_RS08580 sirA 1650604..1651050 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  PPM30_RS08585 yneF 1651136..1651354 (+) 219 WP_003221221.1 YneF family protein -
  PPM30_RS08590 ynzD 1651428..1651601 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=713544 PPM30_RS08555 WP_003238209.1 1646226..1646843(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain MGP003]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=713544 PPM30_RS08555 WP_003238209.1 1646226..1646843(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGTTCTACTGTCCACGGCCATTTGGCCCGTTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1