Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   PPM30_RS08245 Genome accession   NZ_CP116868
Coordinates   1588973..1589404 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583973..1594404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS08225 spoVS 1584534..1584794 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  PPM30_RS08230 tdh 1585060..1586103 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  PPM30_RS08235 kbl 1586116..1587294 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  PPM30_RS08240 miaB 1587442..1588971 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PPM30_RS08245 ymcA 1588973..1589404 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  PPM30_RS08250 cotE 1589666..1590211 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  PPM30_RS08255 hexA 1590344..1592920 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=713541 PPM30_RS08245 WP_003231834.1 1588973..1589404(+) (ymcA) [Bacillus subtilis subsp. subtilis strain MGP003]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=713541 PPM30_RS08245 WP_003231834.1 1588973..1589404(+) (ymcA) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1