Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PPM66_RS18480 Genome accession   NZ_CP116867
Coordinates   3540955..3541644 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535955..3546644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS18460 yxeA 3536860..3537207 (-) 348 WP_003227084.1 YxeA family protein -
  PPM66_RS18465 yxdM 3537221..3539089 (-) 1869 WP_003244410.1 ABC transporter permease YxdM -
  PPM66_RS18470 yxdL 3539064..3539837 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  PPM66_RS18475 yxdK 3539981..3540958 (-) 978 WP_003243885.1 two-component system sensor histidine kinase YxdK -
  PPM66_RS18480 braR 3540955..3541644 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  PPM66_RS18485 iolJ 3541752..3542624 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  PPM66_RS18490 iolI 3542645..3543481 (-) 837 WP_003244546.1 2-keto-myo-inositol isomerase -
  PPM66_RS18495 iolH 3543567..3544436 (-) 870 WP_003243149.1 sugar phosphate isomerase/epimerase family protein -
  PPM66_RS18500 iolG 3544456..3545490 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=713464 PPM66_RS18480 WP_003243527.1 3540955..3541644(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP008]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=713464 PPM66_RS18480 WP_003243527.1 3540955..3541644(-) (braR) [Bacillus subtilis subsp. subtilis strain MGP008]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406