Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NP445_RS19445 Genome accession   NZ_CP101938
Coordinates   3750946..3752058 (+) Length   370 a.a.
NCBI ID   WP_256688898.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3745946..3757058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS19420 (NP445_19420) rnpA 3746697..3747056 (-) 360 WP_008347592.1 ribonuclease P protein component -
  NP445_RS19425 (NP445_19425) rpmH 3747135..3747269 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  NP445_RS19430 (NP445_19430) dnaA 3747890..3749230 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  NP445_RS19435 (NP445_19435) dnaN 3749427..3750563 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  NP445_RS19440 (NP445_19440) yaaA 3750714..3750929 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  NP445_RS19445 (NP445_19445) recF 3750946..3752058 (+) 1113 WP_256688898.1 DNA replication/repair protein RecF Machinery gene
  NP445_RS19450 (NP445_19450) remB 3752076..3752321 (+) 246 WP_024718423.1 extracellular matrix regulator RemB -
  NP445_RS19455 (NP445_19455) gyrB 3752379..3754295 (+) 1917 WP_256689380.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42601.72 Da        Isoelectric Point: 7.3663

>NTDB_id=713423 NP445_RS19445 WP_256688898.1 3750946..3752058(+) (recF) [Bacillus altitudinis strain BDGP7]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLKLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=713423 NP445_RS19445 WP_256688898.1 3750946..3752058(+) (recF) [Bacillus altitudinis strain BDGP7]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGAAGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCAAGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTGCTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACTACGAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

82.927

99.73

0.827