Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NP445_RS10175 Genome accession   NZ_CP101938
Coordinates   1998506..1999141 (+) Length   211 a.a.
NCBI ID   WP_041507036.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993506..2004141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS10135 (NP445_10135) - 1993670..1994788 (+) 1119 WP_234710323.1 NADH-dependent flavin oxidoreductase -
  NP445_RS10140 (NP445_10140) - 1994838..1995344 (-) 507 WP_058336717.1 PTS glucose transporter subunit IIA -
  NP445_RS10145 (NP445_10145) - 1995513..1995932 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  NP445_RS10150 (NP445_10150) - 1995954..1996406 (-) 453 WP_017359729.1 YppG family protein -
  NP445_RS10155 (NP445_10155) - 1996515..1996895 (-) 381 WP_225310452.1 YppE family protein -
  NP445_RS10160 (NP445_10160) - 1996945..1997181 (-) 237 WP_024718530.1 DUF5446 family protein -
  NP445_RS10165 (NP445_10165) sspM 1997375..1997479 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  NP445_RS10170 (NP445_10170) - 1997503..1998459 (-) 957 WP_041507037.1 DUF2515 domain-containing protein -
  NP445_RS10175 (NP445_10175) recU 1998506..1999141 (+) 636 WP_041507036.1 Holliday junction resolvase RecU Machinery gene
  NP445_RS10180 (NP445_10180) - 1999161..2001833 (+) 2673 WP_035702944.1 PBP1A family penicillin-binding protein -
  NP445_RS10185 (NP445_10185) - 2001869..2002378 (-) 510 WP_256688470.1 YpoC family protein -
  NP445_RS10190 (NP445_10190) nth 2002375..2003037 (-) 663 WP_008344602.1 endonuclease III -
  NP445_RS10195 (NP445_10195) - 2003055..2003759 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24288.52 Da        Isoelectric Point: 9.6582

>NTDB_id=713394 NP445_RS10175 WP_041507036.1 1998506..1999141(+) (recU) [Bacillus altitudinis strain BDGP7]
MIRYPNGKSYQPIQQIGTKKRSSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=713394 NP445_RS10175 WP_041507036.1 1998506..1999141(+) (recU) [Bacillus altitudinis strain BDGP7]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAAGCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697