Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NP445_RS08810 Genome accession   NZ_CP101938
Coordinates   1733877..1734257 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BDGP7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1728877..1739257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS08800 (NP445_08800) - 1730600..1731508 (+) 909 WP_061419183.1 serine protease -
  NP445_RS08805 (NP445_08805) - 1731655..1733649 (+) 1995 WP_256689281.1 glycosyltransferase family 39 protein -
  NP445_RS08810 (NP445_08810) nucA/comI 1733877..1734257 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NP445_RS08815 (NP445_08815) - 1734401..1735249 (+) 849 WP_017359585.1 STAS domain-containing protein -
  NP445_RS08820 (NP445_08820) - 1735282..1735824 (-) 543 WP_256689282.1 IseA DL-endopeptidase inhibitor family protein -
  NP445_RS08825 (NP445_08825) - 1736126..1736563 (+) 438 WP_057079489.1 hypothetical protein -
  NP445_RS08830 (NP445_08830) lexA 1736611..1737231 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  NP445_RS08835 (NP445_08835) yneA 1737391..1737702 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  NP445_RS08840 (NP445_08840) - 1737720..1738367 (+) 648 WP_017359583.1 recombinase family protein -
  NP445_RS08845 (NP445_08845) - 1738437..1738667 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=713393 NP445_RS08810 WP_224559893.1 1733877..1734257(+) (nucA/comI) [Bacillus altitudinis strain BDGP7]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=713393 NP445_RS08810 WP_224559893.1 1733877..1734257(+) (nucA/comI) [Bacillus altitudinis strain BDGP7]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556