Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NP445_RS05290 Genome accession   NZ_CP101938
Coordinates   1044187..1044765 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain BDGP7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039187..1049765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS05270 (NP445_05270) - 1039681..1040988 (-) 1308 Protein_985 globin-coupled sensor protein -
  NP445_RS05275 (NP445_05275) - 1041068..1042600 (-) 1533 WP_256689152.1 FAD-dependent oxidoreductase -
  NP445_RS05280 (NP445_05280) - 1042742..1043602 (+) 861 WP_135009080.1 SDR family oxidoreductase -
  NP445_RS05285 (NP445_05285) - 1043661..1043897 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  NP445_RS05290 (NP445_05290) comK 1044187..1044765 (+) 579 WP_017366958.1 competence protein ComK Regulator
  NP445_RS05295 (NP445_05295) - 1044908..1046014 (+) 1107 WP_256689153.1 D-TA family PLP-dependent enzyme -
  NP445_RS05300 (NP445_05300) - 1046401..1046883 (+) 483 WP_008348662.1 hypothetical protein -
  NP445_RS05305 (NP445_05305) - 1046914..1048353 (-) 1440 WP_186365893.1 PLP-dependent aminotransferase family protein -
  NP445_RS05310 (NP445_05310) - 1048497..1049666 (+) 1170 WP_024720010.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=713373 NP445_RS05290 WP_017366958.1 1044187..1044765(+) (comK) [Bacillus altitudinis strain BDGP7]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=713373 NP445_RS05290 WP_017366958.1 1044187..1044765(+) (comK) [Bacillus altitudinis strain BDGP7]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGTTGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAACTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615