Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NP445_RS02090 Genome accession   NZ_CP101938
Coordinates   382937..383365 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain BDGP7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 377937..388365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP445_RS02060 (NP445_02060) - 378082..378411 (+) 330 WP_256688990.1 YckD family protein -
  NP445_RS02065 (NP445_02065) - 378458..379222 (-) 765 WP_256688991.1 MBL fold metallo-hydrolase -
  NP445_RS02070 (NP445_02070) - 379338..379757 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  NP445_RS02075 (NP445_02075) - 379782..380588 (+) 807 WP_024718957.1 aminoglycoside N(3)-acetyltransferase -
  NP445_RS02080 (NP445_02080) comJ 380590..380976 (-) 387 WP_035703161.1 competence protein ComJ -
  NP445_RS02085 (NP445_02085) - 381113..382810 (-) 1698 WP_256688992.1 methyl-accepting chemotaxis protein -
  NP445_RS02090 (NP445_02090) nucA/comI 382937..383365 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NP445_RS02095 (NP445_02095) - 383734..385803 (+) 2070 WP_256688993.1 hydantoinase/oxoprolinase family protein -
  NP445_RS02100 (NP445_02100) - 385793..387778 (+) 1986 WP_256688994.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=713367 NP445_RS02090 WP_007498233.1 382937..383365(-) (nucA/comI) [Bacillus altitudinis strain BDGP7]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=713367 NP445_RS02090 WP_007498233.1 382937..383365(-) (nucA/comI) [Bacillus altitudinis strain BDGP7]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAACACA
TAGAAGAAGCAATTGATGAAGGGCATTCTTCCATTTGCACCATTGATCGGAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGTGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514