Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NP434_RS17950 Genome accession   NZ_CP101936
Coordinates   3496093..3497484 (-) Length   463 a.a.
NCBI ID   WP_256683017.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491093..3502484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS17915 (NP434_17915) flgL 3491265..3492161 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NP434_RS17920 (NP434_17920) flgK 3492172..3493695 (-) 1524 WP_088327073.1 flagellar hook-associated protein FlgK -
  NP434_RS17925 (NP434_17925) flgN 3493714..3494196 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NP434_RS17930 (NP434_17930) flgM 3494212..3494478 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NP434_RS17935 (NP434_17935) yvyF 3494559..3494978 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  NP434_RS17940 (NP434_17940) comFC 3495051..3495773 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  NP434_RS17945 (NP434_17945) comFB 3495737..3496033 (-) 297 WP_015483764.1 late competence protein ComFB -
  NP434_RS17950 (NP434_17950) comFA 3496093..3497484 (-) 1392 WP_256683017.1 ATP-dependent helicase ComFA Machinery gene
  NP434_RS17955 (NP434_17955) fakBA 3497590..3498435 (-) 846 WP_003244125.1 DegV family protein -
  NP434_RS17960 (NP434_17960) degU 3498533..3499222 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NP434_RS17965 (NP434_17965) degS 3499305..3500462 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NP434_RS17970 (NP434_17970) yvyE 3500679..3501332 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52637.69 Da        Isoelectric Point: 9.9550

>NTDB_id=713266 NP434_RS17950 WP_256683017.1 3496093..3497484(-) (comFA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKERLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=713266 NP434_RS17950 WP_256683017.1 3496093..3497484(-) (comFA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGAGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.784

100

0.998