Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NP434_RS12600 Genome accession   NZ_CP101936
Coordinates   2475796..2476563 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2470796..2481563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS12580 (NP434_12580) ppsR 2470970..2471782 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NP434_RS12585 (NP434_12585) ccpN 2471808..2472446 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NP434_RS12590 (NP434_12590) glyS 2472579..2474618 (-) 2040 WP_029317896.1 glycine--tRNA ligase subunit beta -
  NP434_RS12595 (NP434_12595) glyQ 2474611..2475498 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NP434_RS12600 (NP434_12600) recO 2475796..2476563 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  NP434_RS12605 (NP434_12605) yqzL 2476600..2476743 (-) 144 WP_003230053.1 YqzL family protein -
  NP434_RS12610 (NP434_12610) era 2476891..2477796 (-) 906 WP_024572411.1 GTPase Era -
  NP434_RS12615 (NP434_12615) - 2477777..2478187 (-) 411 WP_003230049.1 cytidine deaminase -
  NP434_RS12620 (NP434_12620) unpK 2478306..2478677 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  NP434_RS12625 (NP434_12625) ybeY 2478658..2479131 (-) 474 WP_124058621.1 rRNA maturation RNase YbeY -
  NP434_RS12630 (NP434_12630) pgpH 2479132..2481267 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=713247 NP434_RS12600 WP_015384118.1 2475796..2476563(-) (recO) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=713247 NP434_RS12600 WP_015384118.1 2475796..2476563(-) (recO) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAGCATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992