Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NP434_RS11085 Genome accession   NZ_CP101936
Coordinates   2208618..2209238 (+) Length   206 a.a.
NCBI ID   WP_256682848.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203618..2214238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS11045 (NP434_11045) ptsA 2204746..2205252 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  NP434_RS11050 (NP434_11050) ypqA 2205390..2205809 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  NP434_RS11055 (NP434_11055) sppG 2205830..2206207 (-) 378 WP_015251832.1 YppG family protein -
  NP434_RS11060 (NP434_11060) yppF 2206395..2206583 (+) 189 WP_003230690.1 YppF family protein -
  NP434_RS11065 (NP434_11065) yppE 2206625..2206996 (-) 372 WP_003246080.1 YppE family protein -
  NP434_RS11070 (NP434_11070) yppD 2207042..2207287 (-) 246 WP_004398488.1 YppD family protein -
  NP434_RS11075 (NP434_11075) sspM 2207486..2207590 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NP434_RS11080 (NP434_11080) yppC 2207615..2208577 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  NP434_RS11085 (NP434_11085) recU 2208618..2209238 (+) 621 WP_256682848.1 Holliday junction resolvase RecU Machinery gene
  NP434_RS11090 (NP434_11090) ponA 2209260..2212019 (+) 2760 WP_256682849.1 transglycosylase domain-containing protein -
  NP434_RS11095 (NP434_11095) ypoC 2212095..2212589 (-) 495 WP_009967579.1 YpoC family protein -
  NP434_RS11100 (NP434_11100) nth 2212586..2213245 (-) 660 WP_009967580.1 endonuclease III -
  NP434_RS11105 (NP434_11105) dnaD 2213264..2213962 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.10 Da        Isoelectric Point: 9.6239

>NTDB_id=713235 NP434_RS11085 WP_256682848.1 2208618..2209238(+) (recU) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVLYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=713235 NP434_RS11085 WP_256682848.1 2208618..2209238(+) (recU) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCTTTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995