Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NP434_RS08700 Genome accession   NZ_CP101936
Coordinates   1680985..1681878 (+) Length   297 a.a.
NCBI ID   WP_086343834.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1675985..1686878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS08680 (NP434_08680) - 1676655..1678385 (+) 1731 WP_029726490.1 hypothetical protein -
  NP434_RS08685 (NP434_08685) ylqH 1678382..1678663 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NP434_RS08690 (NP434_08690) sucC 1678836..1679993 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NP434_RS08695 (NP434_08695) sucD 1680022..1680924 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  NP434_RS08700 (NP434_08700) dprA 1680985..1681878 (+) 894 WP_086343834.1 DNA-processing protein DprA Machinery gene
  NP434_RS08705 (NP434_08705) topA 1682067..1684142 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  NP434_RS08710 (NP434_08710) trmFO 1684218..1685525 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NP434_RS08715 (NP434_08715) xerC 1685593..1686507 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32874.22 Da        Isoelectric Point: 10.0054

>NTDB_id=713231 NP434_RS08700 WP_086343834.1 1680985..1681878(+) (dprA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKVICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=713231 NP434_RS08700 WP_086343834.1 1680985..1681878(+) (dprA) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGTGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

41.418

90.236

0.374