Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NP436_RS16210 Genome accession   NZ_CP101932
Coordinates   3017729..3018373 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012729..3023373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS16175 (NP436_16175) mrpB 3013921..3014352 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NP436_RS16180 (NP436_16180) mrpC 3014352..3014693 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  NP436_RS16185 (NP436_16185) mrpD 3014686..3016167 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  NP436_RS16190 (NP436_16190) mrpE 3016173..3016649 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NP436_RS16195 (NP436_16195) mrpF 3016649..3016933 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NP436_RS16200 (NP436_16200) mnhG 3016917..3017291 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NP436_RS16205 (NP436_16205) yuxO 3017330..3017710 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NP436_RS16210 (NP436_16210) comA 3017729..3018373 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NP436_RS16215 (NP436_16215) - 3018454..3019953 (-) 1500 Protein_3125 sensor histidine kinase -
  NP436_RS16220 (NP436_16220) - 3020050..3021297 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  NP436_RS16225 (NP436_16225) - 3021289..3022143 (-) 855 WP_256682815.1 hypothetical protein -
  NP436_RS16230 (NP436_16230) comX 3022159..3022380 (-) 222 WP_014480704.1 competence pheromone ComX -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=713182 NP436_RS16210 WP_003220716.1 3017729..3018373(-) (comA) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=713182 NP436_RS16210 WP_003220716.1 3017729..3018373(-) (comA) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1