Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NP436_RS08120 Genome accession   NZ_CP101932
Coordinates   1533836..1534114 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528836..1539114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS08100 (NP436_08100) panEB 1530024..1530935 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  NP436_RS08105 (NP436_08105) ampS 1530969..1532201 (-) 1233 WP_003232341.1 aminopeptidase -
  NP436_RS08110 (NP436_08110) ykpC 1532310..1532444 (-) 135 WP_003238865.1 protein YkpC -
  NP436_RS08115 (NP436_08115) mreBH 1532545..1533552 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NP436_RS08120 (NP436_08120) abrB 1533836..1534114 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NP436_RS08125 (NP436_08125) kinC 1534304..1535587 (+) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  NP436_RS08130 (NP436_08130) ykqA 1535603..1536436 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  NP436_RS08135 (NP436_08135) ktrC 1536499..1537164 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NP436_RS08140 (NP436_08140) ade 1537319..1539052 (+) 1734 WP_014479688.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=713152 NP436_RS08120 WP_003244728.1 1533836..1534114(+) (abrB) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=713152 NP436_RS08120 WP_003244728.1 1533836..1534114(+) (abrB) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576