Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NP436_RS05855 Genome accession   NZ_CP101932
Coordinates   1125400..1125978 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120400..1130978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS22065 - 1120920..1121435 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NP436_RS22070 - 1121676..1122302 (-) 627 Protein_1084 protoglobin domain-containing protein -
  NP436_RS05840 (NP436_05840) comW 1122357..1123885 (-) 1529 Protein_1085 FAD-dependent oxidoreductase -
  NP436_RS05845 (NP436_05845) yhxC 1123989..1124846 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  NP436_RS05850 (NP436_05850) yhzC 1124874..1125107 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NP436_RS05855 (NP436_05855) comK 1125400..1125978 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NP436_RS05860 (NP436_05860) yhxD 1126023..1126922 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  NP436_RS05865 (NP436_05865) yhjA 1127139..1127408 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  NP436_RS05870 (NP436_05870) yhjB 1127452..1128921 (-) 1470 WP_014479374.1 sodium:solute symporter -
  NP436_RS05875 (NP436_05875) yhjC 1128918..1129118 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NP436_RS05880 (NP436_05880) - 1129317..1129688 (-) 372 WP_014476361.1 hypothetical protein -
  NP436_RS05885 (NP436_05885) yhjE 1129840..1130463 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  NP436_RS05890 (NP436_05890) lepB 1130465..1130971 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=713138 NP436_RS05855 WP_003245329.1 1125400..1125978(+) (comK) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=713138 NP436_RS05855 WP_003245329.1 1125400..1125978(+) (comK) [Bacillus subtilis subsp. natto strain BGSC 27E1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1