Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NP432_RS17960 Genome accession   NZ_CP101931
Coordinates   3498533..3499222 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BGSC b98af     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493533..3504222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS17925 (NP432_17925) flgN 3493714..3494196 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NP432_RS17930 (NP432_17930) flgM 3494212..3494478 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NP432_RS17935 (NP432_17935) yvyF 3494559..3494978 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  NP432_RS17940 (NP432_17940) comFC 3495051..3495773 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  NP432_RS17945 (NP432_17945) comFB 3495737..3496033 (-) 297 WP_015483764.1 late competence protein ComFB -
  NP432_RS17950 (NP432_17950) comFA 3496093..3497484 (-) 1392 WP_256683017.1 ATP-dependent helicase ComFA Machinery gene
  NP432_RS17955 (NP432_17955) fakBA 3497590..3498435 (-) 846 WP_003244125.1 DegV family protein -
  NP432_RS17960 (NP432_17960) degU 3498533..3499222 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NP432_RS17965 (NP432_17965) degS 3499305..3500462 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NP432_RS17970 (NP432_17970) yvyE 3500679..3501332 (+) 654 WP_003227979.1 YigZ family protein -
  NP432_RS17975 (NP432_17975) tagV 3501332..3502507 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NP432_RS17980 (NP432_17980) tagO 3502580..3503656 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=713111 NP432_RS17960 WP_003219701.1 3498533..3499222(-) (degU) [Bacillus subtilis strain BGSC b98af]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=713111 NP432_RS17960 WP_003219701.1 3498533..3499222(-) (degU) [Bacillus subtilis strain BGSC b98af]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1