Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   PNF29_RS21480 Genome accession   NZ_CP116773
Coordinates   4049972..4050202 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM125727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4044972..4055202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS21470 (PNF29_21470) spoVT 4045697..4046233 (-) 537 WP_003218365.1 stage V sporulation protein T -
  PNF29_RS21475 (PNF29_21475) mfd 4046369..4049902 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  PNF29_RS21480 (PNF29_21480) subA/fin 4049972..4050202 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  PNF29_RS21485 (PNF29_21485) pth 4050262..4050828 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  PNF29_RS21490 (PNF29_21490) rplYB 4050935..4051549 (-) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  PNF29_RS21495 (PNF29_21495) prsS 4051634..4052587 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  PNF29_RS21500 (PNF29_21500) glmU 4052610..4053980 (-) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  PNF29_RS21505 (PNF29_21505) spoVG 4054173..4054466 (-) 294 WP_003218346.1 septation regulator SpoVG -
  PNF29_RS21510 (PNF29_21510) ridA 4054661..4055038 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=713098 PNF29_RS21480 WP_003243417.1 4049972..4050202(-) (subA/fin) [Bacillus subtilis strain SRCM125727]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=713098 PNF29_RS21480 WP_003243417.1 4049972..4050202(-) (subA/fin) [Bacillus subtilis strain SRCM125727]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1