Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   PNF29_RS18330 Genome accession   NZ_CP116773
Coordinates   3463354..3463995 (-) Length   213 a.a.
NCBI ID   WP_015382876.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458354..3468995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS18315 (PNF29_18315) ydfK 3458857..3459546 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  PNF29_RS18320 (PNF29_18320) cesA 3459749..3460651 (+) 903 WP_003234180.1 carboxylesterase -
  PNF29_RS18325 (PNF29_18325) pleJ 3461064..3463238 (-) 2175 WP_144453510.1 MMPL family transporter -
  PNF29_RS18330 (PNF29_18330) vraR 3463354..3463995 (-) 642 WP_015382876.1 two-component system response regulator YdfI Regulator
  PNF29_RS18335 (PNF29_18335) ydfH 3463988..3465211 (-) 1224 WP_033880456.1 two-component system sensor histidine kinase YdfH -
  PNF29_RS18340 (PNF29_18340) - 3465479..3465622 (+) 144 WP_014478971.1 hypothetical protein -
  PNF29_RS18345 (PNF29_18345) - 3465619..3465798 (+) 180 WP_010886421.1 hypothetical protein -
  PNF29_RS18350 (PNF29_18350) ydfG 3465884..3466327 (+) 444 WP_041057128.1 carboxymuconolactone decarboxylase family protein -
  PNF29_RS18355 (PNF29_18355) ydfF 3466407..3467087 (-) 681 WP_041057126.1 ArsR/SmtB family transcription factor -
  PNF29_RS18360 (PNF29_18360) ydfE 3467177..3467800 (+) 624 WP_272515694.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23946.90 Da        Isoelectric Point: 5.4183

>NTDB_id=713079 PNF29_RS18330 WP_015382876.1 3463354..3463995(-) (vraR) [Bacillus subtilis strain SRCM125727]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=713079 PNF29_RS18330 WP_015382876.1 3463354..3463995(-) (vraR) [Bacillus subtilis strain SRCM125727]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACTATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371