Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PNF29_RS17080 Genome accession   NZ_CP116773
Coordinates   3203898..3204614 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain SRCM125727     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3198898..3209614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS17075 (PNF29_17075) hypO 3203093..3203758 (-) 666 WP_041055571.1 NAD(P)H-dependent oxidoreductase -
  PNF29_RS17080 (PNF29_17080) treR 3203898..3204614 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  PNF29_RS17085 (PNF29_17085) treC 3204635..3206320 (-) 1686 WP_129137517.1 alpha,alpha-phosphotrehalase -
  PNF29_RS17090 (PNF29_17090) treP 3206391..3207803 (-) 1413 WP_272515661.1 PTS system trehalose-specific EIIBC component -
  PNF29_RS17095 (PNF29_17095) - 3207996..3208730 (+) 735 Protein_3365 spore germination protein -
  PNF29_RS17100 (PNF29_17100) - 3208726..3208930 (-) 205 Protein_3366 sodium:alanine symporter family protein -
  PNF29_RS17105 (PNF29_17105) yflB 3209055..3209447 (-) 393 WP_003233692.1 DUF1992 domain-containing protein -
  PNF29_RS17110 (PNF29_17110) - 3209462..3209602 (-) 141 WP_272515662.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=713075 PNF29_RS17080 WP_003233679.1 3203898..3204614(-) (treR) [Bacillus subtilis strain SRCM125727]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=713075 PNF29_RS17080 WP_003233679.1 3203898..3204614(-) (treR) [Bacillus subtilis strain SRCM125727]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCAGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416