Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   PNF29_RS15940 Genome accession   NZ_CP116773
Coordinates   2988786..2991677 (-) Length   963 a.a.
NCBI ID   WP_272515632.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2983786..2996677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS15895 (PNF29_15895) scoC 2984038..2984649 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  PNF29_RS15900 (PNF29_15900) yhaI 2984646..2984987 (-) 342 WP_009966921.1 YhaI family protein -
  PNF29_RS15905 (PNF29_15905) yhaJ 2985195..2985713 (+) 519 WP_003245590.1 DUF3267 domain-containing protein -
  PNF29_RS15910 (PNF29_15910) - 2985821..2986003 (+) 183 WP_024571667.1 hypothetical protein -
  PNF29_RS15915 (PNF29_15915) yhzE2 2986056..2986142 (-) 87 WP_003155248.1 sporulation protein YhzE2 -
  PNF29_RS15920 (PNF29_15920) yhzE1 2986267..2986353 (-) 87 WP_003327753.1 sporulation protein YhzE1 -
  PNF29_RS15925 (PNF29_15925) prsA 2986513..2987391 (+) 879 WP_003245079.1 peptidylprolyl isomerase PrsA -
  PNF29_RS15930 (PNF29_15930) yhaL 2987431..2987643 (-) 213 WP_003233252.1 sporulation protein YhaL -
  PNF29_RS15935 (PNF29_15935) yhaM 2987768..2988712 (-) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  PNF29_RS15940 (PNF29_15940) sbcE 2988786..2991677 (-) 2892 WP_272515632.1 DNA repair/recombination ATPase SbcE Machinery gene
  PNF29_RS15945 (PNF29_15945) yhaO 2991682..2992908 (-) 1227 WP_210216562.1 metallophosphoesterase family protein -
  PNF29_RS15950 (PNF29_15950) yhaP 2993015..2994274 (-) 1260 WP_144452939.1 ABC transporter permease -
  PNF29_RS15955 (PNF29_15955) yhaQ 2994267..2995163 (-) 897 WP_041338159.1 ABC transporter ATP-binding protein -
  PNF29_RS15960 (PNF29_15960) yhzD 2995290..2995475 (+) 186 WP_003233264.1 YhzD family protein -
  PNF29_RS15965 (PNF29_15965) yhaR 2995496..2996263 (-) 768 WP_272515633.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 110842.98 Da        Isoelectric Point: 6.3916

>NTDB_id=713069 PNF29_RS15940 WP_272515632.1 2988786..2991677(-) (sbcE) [Bacillus subtilis strain SRCM125727]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGIYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEADEAGYHQLLGEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPNKELLAKETLIQ
ELSAGFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVHAASSAILENSQRKDKEAALRVYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKPSSRNSRETRQPMTDISPAEAEMLRGALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRIFEERVSMLLPVNQSQ
DLSISDALHTLRKNIEREKEIEMQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQIRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIKNKLERHKKIELPRLLKTAGEFFRPLTDGSYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLTEGGGQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=713069 PNF29_RS15940 WP_272515632.1 2988786..2991677(-) (sbcE) [Bacillus subtilis strain SRCM125727]
GTGACAGCTTTGCGAATTATATCTTTACACATCTACCAATATGGAAAATTTTCTAATCGAACCTTTCATTTTTCCGCCTC
TCCTGTCCAAGTTATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTATCTACGGCGGTGTTCTCGAAGCTGAGCATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGTGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCCTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGATGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTGCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TAAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCAATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGGGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCTGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCATGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGTATATGATGAAACACAAGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGGAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAATATTCGAGGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATCTCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGATGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGACACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGATCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTGTCAGATCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAAAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGAAGACAGCAGGAGAATTCTTCCGCCCCCTGACTGACGGAAGCT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGAGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTCTGGCTGTTACGCGCCAGGGGGGGTCAAAGCT
TCCGTTTCAGCTTGACGACAGCTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAA
CCGAAGGCGGAGGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATTATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

97.612

100

0.976