Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PNF29_RS15865 Genome accession   NZ_CP116773
Coordinates   2979573..2980316 (-) Length   247 a.a.
NCBI ID   WP_017695370.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2974573..2985316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS15845 (PNF29_15845) - 2974952..2976343 (+) 1392 WP_080031051.1 hypothetical protein -
  PNF29_RS15850 (PNF29_15850) sndC 2976416..2977606 (+) 1191 WP_017695367.1 N-acetyl amino acid acetylase SndC -
  PNF29_RS15855 (PNF29_15855) ecsC 2977624..2978334 (-) 711 WP_017695368.1 EcsC family protein -
  PNF29_RS15860 (PNF29_15860) ecsB 2978354..2979580 (-) 1227 WP_017695369.1 ABC transporter permease EcsB -
  PNF29_RS15865 (PNF29_15865) pptA 2979573..2980316 (-) 744 WP_017695370.1 ABC transporter ATP-binding protein EcsA Regulator
  PNF29_RS15870 (PNF29_15870) hinT 2980803..2981240 (+) 438 WP_003233231.1 HIT family protein -
  PNF29_RS15875 (PNF29_15875) serC 2981387..2982466 (+) 1080 WP_014479338.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  PNF29_RS15880 (PNF29_15880) trpP 2982591..2983109 (+) 519 WP_003233236.1 tryptophan transporter TrpP -
  PNF29_RS15885 (PNF29_15885) - 2983183..2983374 (-) 192 WP_017695371.1 hypothetical protein -
  PNF29_RS15890 (PNF29_15890) yhaH 2983504..2983860 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  PNF29_RS15895 (PNF29_15895) scoC 2984038..2984649 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  PNF29_RS15900 (PNF29_15900) yhaI 2984646..2984987 (-) 342 WP_009966921.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27695.18 Da        Isoelectric Point: 5.9114

>NTDB_id=713068 PNF29_RS15865 WP_017695370.1 2979573..2980316(-) (pptA) [Bacillus subtilis strain SRCM125727]
MSLLSVKDLTGGYTRNPVLKSVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=713068 PNF29_RS15865 WP_017695370.1 2979573..2980316(-) (pptA) [Bacillus subtilis strain SRCM125727]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAGCGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAACATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCAGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547