Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NP432_RS05670 Genome accession   NZ_CP101931
Coordinates   1087470..1088048 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BGSC b98af     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082470..1093048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS21040 - 1082981..1083496 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NP432_RS21045 - 1083737..1084363 (-) 627 Protein_1051 protoglobin domain-containing protein -
  NP432_RS05655 (NP432_05655) comW 1084418..1085947 (-) 1530 WP_129137558.1 FAD-dependent oxidoreductase -
  NP432_RS05660 (NP432_05660) yhxC 1086059..1086916 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NP432_RS05665 (NP432_05665) yhzC 1086944..1087177 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NP432_RS05670 (NP432_05670) comK 1087470..1088048 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NP432_RS05675 (NP432_05675) yhxD 1088095..1088994 (-) 900 WP_256683334.1 SDR family oxidoreductase -
  NP432_RS05680 (NP432_05680) yhjA 1089211..1089480 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  NP432_RS05685 (NP432_05685) yhjB 1089523..1090992 (-) 1470 WP_003233134.1 sodium:solute symporter -
  NP432_RS05690 (NP432_05690) yhjC 1090989..1091189 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NP432_RS05695 (NP432_05695) - 1091397..1091759 (-) 363 WP_024571727.1 hypothetical protein -
  NP432_RS05700 (NP432_05700) yhjE 1091911..1092534 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NP432_RS05705 (NP432_05705) lepB 1092536..1093042 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=713060 NP432_RS05670 WP_003245329.1 1087470..1088048(+) (comK) [Bacillus subtilis strain BGSC b98af]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=713060 NP432_RS05670 WP_003245329.1 1087470..1088048(+) (comK) [Bacillus subtilis strain BGSC b98af]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1