Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   PNF29_RS15065 Genome accession   NZ_CP116773
Coordinates   2822041..2822958 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM125727     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2817041..2827958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS15040 (PNF29_15040) spx 2817399..2817794 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  PNF29_RS15045 (PNF29_15045) yjbC 2817975..2818553 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  PNF29_RS15050 (PNF29_15050) yjbB 2818718..2819935 (-) 1218 WP_272516191.1 MFS transporter -
  PNF29_RS15055 (PNF29_15055) oppF 2820041..2820958 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  PNF29_RS15060 (PNF29_15060) oppD 2820960..2822036 (-) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  PNF29_RS15065 (PNF29_15065) amiD 2822041..2822958 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  PNF29_RS15070 (PNF29_15070) oppB 2822962..2823897 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  PNF29_RS15075 (PNF29_15075) oppA 2824005..2825642 (-) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  PNF29_RS15080 (PNF29_15080) trpS 2826386..2827378 (+) 993 WP_026113648.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=713056 PNF29_RS15065 WP_003232954.1 2822041..2822958(-) (amiD) [Bacillus subtilis strain SRCM125727]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=713056 PNF29_RS15065 WP_003232954.1 2822041..2822958(-) (amiD) [Bacillus subtilis strain SRCM125727]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364