Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   PNF29_RS13090 Genome accession   NZ_CP116773
Coordinates   2465923..2466372 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM125727     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2460923..2471372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS13060 (PNF29_13060) sepM 2461002..2462027 (-) 1026 WP_014476730.1 protease DdcP Regulator
  PNF29_RS13065 (PNF29_13065) ylbK 2462029..2462811 (-) 783 WP_017694818.1 patatin family protein -
  PNF29_RS13070 (PNF29_13070) spoVV 2462992..2464218 (+) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  PNF29_RS13075 (PNF29_13075) coaD 2464229..2464714 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PNF29_RS13080 (PNF29_13080) rsmD 2464719..2465273 (-) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PNF29_RS13085 (PNF29_13085) ylbG 2465596..2465868 (-) 273 WP_009967171.1 YlbG family protein -
  PNF29_RS13090 (PNF29_13090) ylbF 2465923..2466372 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PNF29_RS13095 (PNF29_13095) ylbE 2466488..2466727 (-) 240 WP_003232231.1 YlbE-like family protein -
  PNF29_RS13100 (PNF29_13100) ylbD 2466743..2467141 (-) 399 WP_003232233.1 YlbD family protein -
  PNF29_RS13105 (PNF29_13105) ylbC 2467373..2468413 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  PNF29_RS13110 (PNF29_13110) ylbB 2468497..2468943 (-) 447 WP_003221362.1 CBS domain-containing protein -
  PNF29_RS13115 (PNF29_13115) ylbA 2469083..2469445 (+) 363 WP_014479712.1 YugN family protein -
  PNF29_RS13120 (PNF29_13120) ctaG 2469477..2470370 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  PNF29_RS13125 (PNF29_13125) ctaF 2470398..2470730 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  PNF29_RS13130 (PNF29_13130) ctaE 2470733..2471356 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=713040 PNF29_RS13090 WP_003221370.1 2465923..2466372(-) (ylbF) [Bacillus subtilis strain SRCM125727]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=713040 PNF29_RS13090 WP_003221370.1 2465923..2466372(-) (ylbF) [Bacillus subtilis strain SRCM125727]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1